├── .clang-format ├── .dockerignore ├── .gitattributes ├── .github ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md └── workflows │ ├── f5c-x86_64.yml │ ├── release-simulation.yml │ └── release.yml ├── .gitignore ├── .travis.yml ├── Dockerfile ├── LICENSE ├── Makefile ├── README.md ├── config.mk.in ├── configure.ac ├── docs └── f5c.1 ├── installdeps.mk ├── scripts ├── bootstrap.sh ├── common.sh ├── compare_methylation.py ├── install-hdf5.sh ├── install-hts.sh ├── install-vbz.sh ├── install-zstd.sh ├── pipelines │ ├── methcall-ultra-pipeline.pbs.sh │ └── methcall-ultra-pipeline.sge.sh ├── plot_methylation.R ├── test.awk └── test.sh ├── slow5lib ├── .gitattributes ├── .gitignore ├── LICENSE ├── Makefile ├── include │ └── slow5 │ │ ├── klib │ │ ├── khash.h │ │ └── kvec.h │ │ ├── slow5.h │ │ ├── slow5_defs.h │ │ ├── slow5_error.h │ │ ├── slow5_mt.h │ │ └── slow5_press.h ├── lib │ └── .gitignore ├── src │ ├── klib │ │ └── ksort.h │ ├── slow5.c │ ├── slow5_byte.h │ ├── slow5_extra.h │ ├── slow5_idx.c │ ├── slow5_idx.h │ ├── slow5_misc.c │ ├── slow5_misc.h │ ├── slow5_mt.c │ └── slow5_press.c └── thirdparty │ └── streamvbyte │ ├── .gitignore │ ├── AUTHORS │ ├── LICENSE │ ├── Makefile │ ├── README.md │ ├── include │ ├── streamvbyte.h │ └── streamvbyte_zigzag.h │ └── src │ ├── streamvbyte_arm_decode.c │ ├── streamvbyte_arm_encode.c │ ├── streamvbyte_decode.c │ ├── streamvbyte_encode.c │ ├── streamvbyte_shuffle_tables_decode.h │ ├── streamvbyte_shuffle_tables_encode.h │ ├── streamvbyte_x64_decode.c │ ├── streamvbyte_x64_encode.c │ └── streamvbyte_zigzag.c ├── src ├── align.c ├── align.cu ├── align.hip ├── error.h ├── eventalign.c ├── events.c ├── f5c.c ├── f5c.cu ├── f5c.h ├── f5c.hip ├── f5c_gpuonly.cu ├── f5c_gpuonly.hip ├── f5cio.c ├── f5cmisc.cuh ├── f5cmisc.h ├── f5cmisc_rocm.h ├── fast5lite.h ├── freq.c ├── freq_merge.c ├── hmm.c ├── index.c ├── khash.h ├── kseq.h ├── ksort.h ├── logsum.h ├── main.c ├── matrix.h ├── meth.c ├── meth_main.c ├── methmodel.c ├── model.c ├── model.h ├── nanopolish_fast5_io.c ├── nanopolish_read_db.c ├── nanopolish_read_db.h ├── profiles.c ├── profiles.h ├── resquiggle.c └── str.h └── test ├── .gitignore ├── autoformat.sh ├── benchmark.sh ├── ecoli_2kb_region ├── adaptive.exp ├── draft.fa ├── draft.fa.fai ├── est_scalings.exp ├── eventalign.summary.exp ├── fast5_files │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch107_read4268_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch109_read2202_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read2109_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read5041_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch118_read886_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read2477_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read955_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch139_read6216_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch144_read1044_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch158_read5484_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch170_read4483_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch174_read3654_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch177_read1452_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch179_read1009_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch196_read2318_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch200_read6055_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch21_read1037_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch24_read2302_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch250_read878_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read2154_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read913_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch281_read4019_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read1687_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read2189_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch28_read503_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read1002_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read2497_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch292_read1173_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch294_read1069_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read1093_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read6122_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch309_read4050_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read4806_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read5270_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch326_read4256_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch342_read2347_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch350_read270_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch353_read1369_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch355_read2033_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read1047_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read4057_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4280_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4310_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4497_strand1.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read5665_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read929_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch381_read3165_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch383_read6112_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read2287_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read3493_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch403_read4689_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch407_read2873_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch40_read4532_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch418_read2596_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch41_read2892_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch420_read357_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch427_read1086_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch432_read393_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch433_read1144_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1483_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1894_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read2386_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read3275_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read394_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read1231_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read5435_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch44_read3066_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2786_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2860_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch467_read81_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch471_read263_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch477_read112_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read328_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read924_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1028_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1935_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read715_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch482_read758_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read1308_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read811_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch485_read77_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch486_read3631_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch490_read814_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch491_read3080_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read2488_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read5399_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch497_read3630_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch501_read29_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read1993_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read3234_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch506_read899_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3215_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3907_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read1147_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3088_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3412_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read1905_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read6087_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch66_read4851_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch69_read998_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch7_read2760_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch80_read1993_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read4752_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read564_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read2098_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read498_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch8_read1768_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch91_read2127_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read114_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read4662_strand.fast5 │ ├── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2298_strand.fast5 │ └── odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2551_strand.fast5 ├── freq-s.exp ├── freq.exp ├── meth.exp ├── polished.fa ├── reads.bam ├── reads.bam.bai ├── reads.blow5 ├── reads.fasta ├── reads.fasta.index ├── reads.fasta.index.fai ├── reads.fasta.index.gzi ├── reads.sorted.bam ├── reads.sorted.bam.bai ├── recalib_scalings.exp ├── ref.fa ├── single_read │ ├── adaptive.exp │ ├── meth.exp │ ├── meth_input.exp │ ├── read1.events.exp │ ├── read1.fasta │ ├── read1.fasta.index │ ├── read1.fasta.index.fai │ ├── read1.fasta.index.gzi │ ├── read1.fasta.index.readdb │ ├── read1.scalings.exp │ ├── read1.sorted.bam │ └── read1.sorted.bam.bai └── testresult.exp ├── group-readlen.py ├── package-rocm.sh ├── r9-models ├── r9.4_450bps.cpg.6mer.template.model ├── r9.4_450bps.nucleotide.5mer.template.model ├── r9.4_450bps.nucleotide.6mer.template.model ├── r9.4_70bps.u_to_t_rna.5mer.template.model └── r9.5_450bps.cpg.6mer.template.round9.model ├── rna004-models └── rna004.nucleotide.5mer.model ├── test_eventalign.awk ├── test_eventalign.sh ├── test_eventalign_paf_sam_m6a.sh ├── test_eventalign_parameters.sh ├── test_eventalign_samples.awk ├── test_eventalign_signal_index.awk ├── test_eventalign_summary.awk ├── test_extensive.sh ├── test_index.sh ├── test_methfreq.sh ├── test_multifast5.sh ├── test_rsq.sh ├── test_slow5.sh ├── test_vbz.sh └── valgrind.supp /.clang-format: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.clang-format -------------------------------------------------------------------------------- /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.dockerignore -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.github/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/workflows/f5c-x86_64.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.github/workflows/f5c-x86_64.yml -------------------------------------------------------------------------------- /.github/workflows/release-simulation.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.github/workflows/release-simulation.yml -------------------------------------------------------------------------------- /.github/workflows/release.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.github/workflows/release.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/.travis.yml -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/README.md -------------------------------------------------------------------------------- /config.mk.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/config.mk.in -------------------------------------------------------------------------------- /configure.ac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/configure.ac -------------------------------------------------------------------------------- /docs/f5c.1: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/docs/f5c.1 -------------------------------------------------------------------------------- /installdeps.mk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/installdeps.mk -------------------------------------------------------------------------------- /scripts/bootstrap.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/bootstrap.sh -------------------------------------------------------------------------------- /scripts/common.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/common.sh -------------------------------------------------------------------------------- /scripts/compare_methylation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/compare_methylation.py -------------------------------------------------------------------------------- /scripts/install-hdf5.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/install-hdf5.sh -------------------------------------------------------------------------------- /scripts/install-hts.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/install-hts.sh -------------------------------------------------------------------------------- /scripts/install-vbz.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/install-vbz.sh -------------------------------------------------------------------------------- /scripts/install-zstd.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/install-zstd.sh -------------------------------------------------------------------------------- /scripts/pipelines/methcall-ultra-pipeline.pbs.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/pipelines/methcall-ultra-pipeline.pbs.sh -------------------------------------------------------------------------------- /scripts/pipelines/methcall-ultra-pipeline.sge.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/pipelines/methcall-ultra-pipeline.sge.sh -------------------------------------------------------------------------------- /scripts/plot_methylation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/plot_methylation.R -------------------------------------------------------------------------------- /scripts/test.awk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/test.awk -------------------------------------------------------------------------------- /scripts/test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/scripts/test.sh -------------------------------------------------------------------------------- /slow5lib/.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/.gitattributes -------------------------------------------------------------------------------- /slow5lib/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/.gitignore -------------------------------------------------------------------------------- /slow5lib/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/LICENSE -------------------------------------------------------------------------------- /slow5lib/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/Makefile -------------------------------------------------------------------------------- /slow5lib/include/slow5/klib/khash.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/klib/khash.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/klib/kvec.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/klib/kvec.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/slow5.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/slow5.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/slow5_defs.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/slow5_defs.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/slow5_error.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/slow5_error.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/slow5_mt.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/slow5_mt.h -------------------------------------------------------------------------------- /slow5lib/include/slow5/slow5_press.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/include/slow5/slow5_press.h -------------------------------------------------------------------------------- /slow5lib/lib/.gitignore: -------------------------------------------------------------------------------- 1 | * 2 | !.gitignore 3 | -------------------------------------------------------------------------------- /slow5lib/src/klib/ksort.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/klib/ksort.h -------------------------------------------------------------------------------- /slow5lib/src/slow5.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5.c -------------------------------------------------------------------------------- /slow5lib/src/slow5_byte.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_byte.h -------------------------------------------------------------------------------- /slow5lib/src/slow5_extra.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_extra.h -------------------------------------------------------------------------------- /slow5lib/src/slow5_idx.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_idx.c -------------------------------------------------------------------------------- /slow5lib/src/slow5_idx.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_idx.h -------------------------------------------------------------------------------- /slow5lib/src/slow5_misc.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_misc.c -------------------------------------------------------------------------------- /slow5lib/src/slow5_misc.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_misc.h -------------------------------------------------------------------------------- /slow5lib/src/slow5_mt.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_mt.c -------------------------------------------------------------------------------- /slow5lib/src/slow5_press.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/src/slow5_press.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/.gitignore -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/AUTHORS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/AUTHORS -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/LICENSE -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/Makefile -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/README.md -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/include/streamvbyte.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/include/streamvbyte.h -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/include/streamvbyte_zigzag.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/include/streamvbyte_zigzag.h -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_arm_decode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_arm_decode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_arm_encode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_arm_encode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_decode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_decode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_encode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_encode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_x64_decode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_x64_decode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_x64_encode.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_x64_encode.c -------------------------------------------------------------------------------- /slow5lib/thirdparty/streamvbyte/src/streamvbyte_zigzag.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/slow5lib/thirdparty/streamvbyte/src/streamvbyte_zigzag.c -------------------------------------------------------------------------------- /src/align.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/align.c -------------------------------------------------------------------------------- /src/align.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/align.cu -------------------------------------------------------------------------------- /src/align.hip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/align.hip -------------------------------------------------------------------------------- /src/error.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/error.h -------------------------------------------------------------------------------- /src/eventalign.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/eventalign.c -------------------------------------------------------------------------------- /src/events.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/events.c -------------------------------------------------------------------------------- /src/f5c.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c.c -------------------------------------------------------------------------------- /src/f5c.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c.cu -------------------------------------------------------------------------------- /src/f5c.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c.h -------------------------------------------------------------------------------- /src/f5c.hip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c.hip -------------------------------------------------------------------------------- /src/f5c_gpuonly.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c_gpuonly.cu -------------------------------------------------------------------------------- /src/f5c_gpuonly.hip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5c_gpuonly.hip -------------------------------------------------------------------------------- /src/f5cio.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5cio.c -------------------------------------------------------------------------------- /src/f5cmisc.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5cmisc.cuh -------------------------------------------------------------------------------- /src/f5cmisc.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5cmisc.h -------------------------------------------------------------------------------- /src/f5cmisc_rocm.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/f5cmisc_rocm.h -------------------------------------------------------------------------------- /src/fast5lite.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/fast5lite.h -------------------------------------------------------------------------------- /src/freq.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/freq.c -------------------------------------------------------------------------------- /src/freq_merge.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/freq_merge.c -------------------------------------------------------------------------------- /src/hmm.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/hmm.c -------------------------------------------------------------------------------- /src/index.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/index.c -------------------------------------------------------------------------------- /src/khash.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/khash.h -------------------------------------------------------------------------------- /src/kseq.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/kseq.h -------------------------------------------------------------------------------- /src/ksort.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/ksort.h -------------------------------------------------------------------------------- /src/logsum.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/logsum.h -------------------------------------------------------------------------------- /src/main.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/main.c -------------------------------------------------------------------------------- /src/matrix.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/matrix.h -------------------------------------------------------------------------------- /src/meth.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/meth.c -------------------------------------------------------------------------------- /src/meth_main.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/meth_main.c -------------------------------------------------------------------------------- /src/methmodel.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/methmodel.c -------------------------------------------------------------------------------- /src/model.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/model.c -------------------------------------------------------------------------------- /src/model.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/model.h -------------------------------------------------------------------------------- /src/nanopolish_fast5_io.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/nanopolish_fast5_io.c -------------------------------------------------------------------------------- /src/nanopolish_read_db.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/nanopolish_read_db.c -------------------------------------------------------------------------------- /src/nanopolish_read_db.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/nanopolish_read_db.h -------------------------------------------------------------------------------- /src/profiles.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/profiles.c -------------------------------------------------------------------------------- /src/profiles.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/profiles.h -------------------------------------------------------------------------------- /src/resquiggle.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/resquiggle.c -------------------------------------------------------------------------------- /src/str.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/src/str.h -------------------------------------------------------------------------------- /test/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/.gitignore -------------------------------------------------------------------------------- /test/autoformat.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/autoformat.sh -------------------------------------------------------------------------------- /test/benchmark.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/benchmark.sh -------------------------------------------------------------------------------- /test/ecoli_2kb_region/adaptive.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/adaptive.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/draft.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/draft.fa -------------------------------------------------------------------------------- /test/ecoli_2kb_region/draft.fa.fai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/draft.fa.fai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/est_scalings.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/est_scalings.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/eventalign.summary.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/eventalign.summary.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch107_read4268_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch107_read4268_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch109_read2202_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch109_read2202_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read2109_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read2109_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read5041_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch111_read5041_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch118_read886_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch118_read886_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read2477_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read2477_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read955_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch123_read955_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch139_read6216_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch139_read6216_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch144_read1044_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch144_read1044_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch158_read5484_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch158_read5484_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch170_read4483_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch170_read4483_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch174_read3654_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch174_read3654_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch177_read1452_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch177_read1452_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch179_read1009_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch179_read1009_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch196_read2318_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch196_read2318_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch200_read6055_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch200_read6055_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch21_read1037_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch21_read1037_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch24_read2302_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch24_read2302_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch250_read878_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch250_read878_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read2154_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read2154_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read913_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch280_read913_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch281_read4019_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch281_read4019_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read1687_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read1687_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read2189_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch289_read2189_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch28_read503_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch28_read503_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read1002_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read1002_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read2497_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch290_read2497_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch292_read1173_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch292_read1173_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch294_read1069_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch294_read1069_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read1093_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read1093_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read6122_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch302_read6122_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch309_read4050_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch309_read4050_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read4806_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read4806_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read5270_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch316_read5270_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch326_read4256_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch326_read4256_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch342_read2347_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch342_read2347_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch350_read270_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch350_read270_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch353_read1369_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch353_read1369_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch355_read2033_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch355_read2033_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read1047_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read1047_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read4057_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch361_read4057_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4280_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4280_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4310_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4310_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4497_strand1.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read4497_strand1.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read5665_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read5665_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read929_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch378_read929_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch381_read3165_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch381_read3165_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch383_read6112_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch383_read6112_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read2287_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read2287_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read3493_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch391_read3493_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch403_read4689_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch403_read4689_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch407_read2873_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch407_read2873_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch40_read4532_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch40_read4532_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch418_read2596_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch418_read2596_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch41_read2892_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch41_read2892_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch420_read357_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch420_read357_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch427_read1086_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch427_read1086_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch432_read393_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch432_read393_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch433_read1144_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch433_read1144_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1483_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1483_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1894_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read1894_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read2386_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read2386_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read3275_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read3275_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read394_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch43_read394_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read1231_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read1231_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read5435_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch442_read5435_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch44_read3066_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch44_read3066_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2786_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2786_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2860_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch460_read2860_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch467_read81_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch467_read81_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch471_read263_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch471_read263_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch477_read112_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch477_read112_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read328_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read328_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read924_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch47_read924_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1028_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1028_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1935_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read1935_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read715_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch481_read715_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch482_read758_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch482_read758_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read1308_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read1308_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read811_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch483_read811_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch485_read77_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch485_read77_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch486_read3631_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch486_read3631_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch490_read814_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch490_read814_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch491_read3080_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch491_read3080_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read2488_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read2488_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read5399_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch493_read5399_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch497_read3630_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch497_read3630_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch501_read29_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch501_read29_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read1993_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read1993_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read3234_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch505_read3234_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch506_read899_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch506_read899_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3215_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3215_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3907_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch54_read3907_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read1147_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read1147_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3088_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3088_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3412_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch57_read3412_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read1905_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read1905_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read6087_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch64_read6087_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch66_read4851_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch66_read4851_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch69_read998_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch69_read998_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch7_read2760_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch7_read2760_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch80_read1993_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch80_read1993_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read4752_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read4752_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read564_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch84_read564_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read2098_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read2098_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read498_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch85_read498_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch8_read1768_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch8_read1768_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch91_read2127_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch91_read2127_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read114_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read114_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read4662_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch95_read4662_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2298_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2298_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2551_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/fast5_files/odw_genlab4209_20161213_FN_MN16303_sequencing_run_sample_id_32395_ch98_read2551_strand.fast5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/freq-s.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/freq-s.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/freq.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/freq.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/meth.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/meth.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/polished.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/polished.fa -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.bam -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.bam.bai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.bam.bai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.blow5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.blow5 -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.fasta -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.fasta.index: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.fasta.index -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.fasta.index.fai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.fasta.index.fai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.fasta.index.gzi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.fasta.index.gzi -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.sorted.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.sorted.bam -------------------------------------------------------------------------------- /test/ecoli_2kb_region/reads.sorted.bam.bai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/reads.sorted.bam.bai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/recalib_scalings.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/recalib_scalings.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/ref.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/ref.fa -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/adaptive.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/adaptive.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/meth.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/meth.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/meth_input.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/meth_input.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.events.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.events.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.fasta -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.fasta.index: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.fasta.index -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.fasta.index.fai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.fasta.index.fai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.fasta.index.gzi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.fasta.index.gzi -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.fasta.index.readdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.fasta.index.readdb -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.scalings.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.scalings.exp -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.sorted.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.sorted.bam -------------------------------------------------------------------------------- /test/ecoli_2kb_region/single_read/read1.sorted.bam.bai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/single_read/read1.sorted.bam.bai -------------------------------------------------------------------------------- /test/ecoli_2kb_region/testresult.exp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/ecoli_2kb_region/testresult.exp -------------------------------------------------------------------------------- /test/group-readlen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/group-readlen.py -------------------------------------------------------------------------------- /test/package-rocm.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/package-rocm.sh -------------------------------------------------------------------------------- /test/r9-models/r9.4_450bps.cpg.6mer.template.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/r9-models/r9.4_450bps.cpg.6mer.template.model -------------------------------------------------------------------------------- /test/r9-models/r9.4_450bps.nucleotide.5mer.template.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/r9-models/r9.4_450bps.nucleotide.5mer.template.model -------------------------------------------------------------------------------- /test/r9-models/r9.4_450bps.nucleotide.6mer.template.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/r9-models/r9.4_450bps.nucleotide.6mer.template.model -------------------------------------------------------------------------------- /test/r9-models/r9.4_70bps.u_to_t_rna.5mer.template.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/r9-models/r9.4_70bps.u_to_t_rna.5mer.template.model -------------------------------------------------------------------------------- /test/r9-models/r9.5_450bps.cpg.6mer.template.round9.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/r9-models/r9.5_450bps.cpg.6mer.template.round9.model -------------------------------------------------------------------------------- /test/rna004-models/rna004.nucleotide.5mer.model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/rna004-models/rna004.nucleotide.5mer.model -------------------------------------------------------------------------------- /test/test_eventalign.awk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign.awk -------------------------------------------------------------------------------- /test/test_eventalign.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign.sh -------------------------------------------------------------------------------- /test/test_eventalign_paf_sam_m6a.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign_paf_sam_m6a.sh -------------------------------------------------------------------------------- /test/test_eventalign_parameters.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign_parameters.sh -------------------------------------------------------------------------------- /test/test_eventalign_samples.awk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign_samples.awk -------------------------------------------------------------------------------- /test/test_eventalign_signal_index.awk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign_signal_index.awk -------------------------------------------------------------------------------- /test/test_eventalign_summary.awk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_eventalign_summary.awk -------------------------------------------------------------------------------- /test/test_extensive.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_extensive.sh -------------------------------------------------------------------------------- /test/test_index.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_index.sh -------------------------------------------------------------------------------- /test/test_methfreq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_methfreq.sh -------------------------------------------------------------------------------- /test/test_multifast5.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_multifast5.sh -------------------------------------------------------------------------------- /test/test_rsq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_rsq.sh -------------------------------------------------------------------------------- /test/test_slow5.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_slow5.sh -------------------------------------------------------------------------------- /test/test_vbz.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/test_vbz.sh -------------------------------------------------------------------------------- /test/valgrind.supp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hasindu2008/f5c/HEAD/test/valgrind.supp --------------------------------------------------------------------------------