├── BC2_Intro_to_workshop.pdf ├── README.md ├── _config.yml ├── answer_keys ├── boxplots_Q1.md ├── custom_plot_scales_Q1.md ├── custom_themes_Q1.md ├── ggplot2_syntax_Q1.md └── ggplot2_syntax_Q2.md ├── assets ├── .DS_Store ├── css │ └── style.scss └── images │ └── dna-sequence-1600x800.jpg ├── fig4J.png ├── img ├── 3_boxplots.png ├── PP_fig4A.png ├── PP_fig4B.png ├── PP_fig4C.png ├── README.md ├── Rcolorbrewer_palettes.png ├── Rcolorbrewer_palettes_cb.png ├── Screen Shot 2021-07-23 at 3.35.06 PM.png ├── annotation_space_boxplot.png ├── asterisk_boxplot.png ├── bad-label_boxplot.png ├── basic_bar_plot.png ├── bd10275.f2.jpg ├── better-label_boxplot.png ├── boxplots.jpeg ├── data_to_viz.png ├── dedicated_page.png ├── draft_1st.png ├── draft_2nd.png ├── draft_volcano_RG.png ├── exp_plot.png ├── fig-F.png ├── fig-H.jpeg ├── fig-I.jpeg ├── fig-I_J.jpeg ├── fig-J.jpeg ├── fig4ABC.png ├── fig4DE.png ├── fig4D_E.jpeg ├── fig4F.png ├── fig4G.png ├── fig4I.png ├── fig4IJ.png ├── fig4J.png ├── fig4fgh.png ├── fig4gh.png ├── fig4h.png ├── figDE.png ├── figure4_completed.png ├── figure4_legend.png ├── figure_to_create.jpg ├── ggpubr.png ├── ggscatter-1.png ├── ggscatter-1alt.png ├── ggscatter-2.png ├── ggscatter-4.png ├── ggscatter-5.png ├── ggscatter-6_alt.png ├── ggven_vanilla.png ├── ggvenn_down.png ├── ggvenn_up.png ├── go_dataset.png ├── graphical_abstract.png ├── heatmap.png ├── heatmap_figure.png ├── label.png ├── label_repel.png ├── labeled_volcano.png ├── layered_boxplot.png ├── meta_heatmap.png ├── metadata.png ├── norm_counts.png ├── pax6_boxplot_1a.png ├── pax6_boxplot_1aa.png ├── pax6_boxplot_1b.png ├── pax6_boxplot_2.png ├── pax6_boxplot_3.png ├── pax6_boxplot_4.png ├── pax6_boxplot_5.png ├── pax6_boxplots.png ├── published_Pax6_boxplot.jpeg ├── radial_glia.jpeg ├── refined_boxplot.png ├── results.png ├── scaled_heatmap.png ├── stats.png ├── stats_boxplot.png ├── stats_signif.png ├── top_half.png ├── unscaled_heatmap.png ├── venn_down.png ├── venn_up.png ├── vocano_grid.png ├── volcano_IP.png └── volcano_neu.png ├── layered_boxplot.png ├── lessons ├── 01_Introduction.md ├── 01_intro_to_dataset.md ├── 02_ggplot2_syntax.md ├── 03_custom_themes.md ├── 04_boxplot_application_of_basic_plotting.md ├── 05_custom_plot_scales_colors.md ├── 06_aligning_plots_using_cowplot.md ├── 06_aligning_plots_using_cowplot_original.md ├── 07_adding_text_annotations.md ├── 07_adding_text_annotations_original.md ├── 08_figure_specific_packages.md ├── 09_final_figure.md ├── 10_pivoting_publications.md ├── bar_plots_exercise.md ├── extra.md └── supp_complexHeatmap.md ├── refined_boxplot.png └── schedule_EST.md /BC2_Intro_to_workshop.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hbctraining/publication_perfect/HEAD/BC2_Intro_to_workshop.pdf -------------------------------------------------------------------------------- /README.md: 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