├── .gitignore ├── LICENSE ├── README.md ├── logo.png ├── onto_vae ├── __init__.py ├── data │ ├── gene_term_mapping.txt │ ├── pbmc_sample_annot.csv │ ├── pbmc_sample_expr.csv │ └── pw.obo ├── fast_data_loader.py ├── modules.py ├── ontobj.py ├── utils.py └── vae_model.py ├── poetry.lock ├── pyproject.toml ├── requirements.txt └── vignette.ipynb /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints 2 | /onto_vae/__pycache__ 3 | /dist -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hdsu-bioquant/onto-vae/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hdsu-bioquant/onto-vae/HEAD/README.md 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