├── .devcontainer └── devcontainer.json ├── .github ├── CONTRIBUTING.md ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── ci.yml │ ├── docs.yml │ └── docs_s3.yml ├── .gitignore ├── .python-version ├── LICENSE ├── README.md ├── deno.json ├── docs ├── README.md ├── _templates │ └── layout.html ├── build.py ├── conf.py ├── examples.rst ├── getting_started.rst ├── higlass_theme │ ├── navigation.html │ ├── static │ │ └── higlass.css │ └── theme.conf ├── img │ ├── beditems.png │ ├── chromsizes-overlay.png │ ├── divided-by-track.png │ ├── eggholder-function.png │ ├── genome-position-search-box.png │ ├── geojson-jupyter.png │ ├── jupyter-bigwig.png │ ├── jupyter-hic-heatmap.png │ ├── jupyter-labelled-points.png │ ├── jupyter-pileup-2025.png │ ├── jupyter-pileup-no-code.png │ ├── jupyter-pileup-with-code.png │ ├── remote-hic.png │ └── two-simple-views.png ├── index.rst └── python_api.rst ├── examples ├── Examples.ipynb ├── JupyterServer.ipynb ├── Plugin.ipynb └── View_Projection.ipynb ├── pyproject.toml ├── src └── higlass │ ├── __init__.py │ ├── _scale.py │ ├── _tileset_registry.py │ ├── _utils.py │ ├── _widget.py │ ├── api.py │ ├── server.py │ ├── tilesets.py │ ├── types.ts │ └── widget.js ├── test ├── test_api.py ├── test_scale.py ├── test_tileset_registery.py └── test_utils.py └── uv.lock /.devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/higlass/higlass-python/HEAD/.devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- 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