├── .gitignore ├── LICENSE ├── README.md ├── code ├── code.sln ├── evaluate_segmentation.py ├── evaluate_segmentation_functions.py ├── helper.py ├── metrics.py ├── predict_full_brain.py ├── prepare_train_val_sets.py ├── run_pipeline.py ├── train_unet.py └── unet.py └── imgs ├── BrainSeg_architecture_cropped.png └── Unet_cropped.png /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/README.md -------------------------------------------------------------------------------- /code/code.sln: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/code.sln -------------------------------------------------------------------------------- /code/evaluate_segmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/evaluate_segmentation.py -------------------------------------------------------------------------------- /code/evaluate_segmentation_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/evaluate_segmentation_functions.py -------------------------------------------------------------------------------- /code/helper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/helper.py -------------------------------------------------------------------------------- /code/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/metrics.py -------------------------------------------------------------------------------- /code/predict_full_brain.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/predict_full_brain.py -------------------------------------------------------------------------------- /code/prepare_train_val_sets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/prepare_train_val_sets.py -------------------------------------------------------------------------------- /code/run_pipeline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/run_pipeline.py -------------------------------------------------------------------------------- /code/train_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/train_unet.py -------------------------------------------------------------------------------- /code/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/code/unet.py -------------------------------------------------------------------------------- /imgs/BrainSeg_architecture_cropped.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/imgs/BrainSeg_architecture_cropped.png -------------------------------------------------------------------------------- /imgs/Unet_cropped.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hilbysfe/brain-vessel-segmentation/HEAD/imgs/Unet_cropped.png --------------------------------------------------------------------------------