├── .gitattributes ├── .gitignore ├── DeepAccNet.py ├── LICENSE ├── README.md ├── figures └── ipdlogo.png ├── ipynbs ├── example.ipynb └── samples.ipynb ├── modeling ├── MainDiversification.py ├── MainIteration.py ├── PostProcess.py ├── QScorer.py ├── Qpool.py ├── README.txt ├── config.py ├── estogram2cst.py ├── examples │ └── examples.tar.gz ├── recomb │ ├── find_partners.py │ └── modeling.py ├── refstat.dbin.seqsep.Q.txt ├── rosetta_scripts │ ├── avrgsilent.sh │ ├── cart2.script │ ├── cross.xml │ ├── cross2.xml │ ├── dual.script │ ├── flags │ ├── mut.xml │ ├── pick_from_div.sh │ └── runhybrid.sh ├── setup.sh └── utils.py ├── models ├── regular_rep1 │ ├── README.md │ ├── checkpoint │ ├── model.ckpt.data-00000-of-00001 │ ├── model.ckpt.index │ ├── model.ckpt.meta │ ├── train.npy │ ├── valid.npy │ ├── valid_e.npy │ ├── valid_l.npy │ └── valid_m.npy ├── regular_rep2 │ ├── README.md │ ├── checkpoint │ ├── model.ckpt.data-00000-of-00001 │ ├── model.ckpt.index │ ├── model.ckpt.meta │ ├── train.npy │ ├── valid.npy │ ├── valid_e.npy │ ├── valid_l.npy │ └── valid_m.npy ├── regular_rep3 │ ├── README.md │ ├── checkpoint │ ├── model.ckpt.data-00000-of-00001 │ ├── model.ckpt.index │ ├── model.ckpt.meta │ ├── train.npy │ ├── valid.npy │ ├── valid_e.npy │ ├── valid_l.npy │ └── valid_m.npy └── regular_rep4 │ ├── README.md │ ├── checkpoint │ ├── model.ckpt.data-00000-of-00001 │ ├── model.ckpt.index │ ├── model.ckpt.meta │ ├── train.npy │ ├── valid.npy │ ├── valid_e.npy │ ├── valid_l.npy │ └── valid_m.npy ├── outputs ├── tag0137.relaxed.al.npz ├── tag0172.relaxed.al.npz └── tag0177.relaxed.al.npz ├── pyErrorPred ├── __init__.py ├── analyze.py ├── conversion.py ├── data │ ├── blosum62.txt │ ├── coarse-group20.txt │ ├── groups20.txt │ └── labeled_features_meiler2001.csv ├── dataProcessingUtils.py ├── deepLearningUtils.py ├── featurize.py ├── layers.py ├── model.py ├── predict.py ├── pyprotein.py └── resnet.py ├── samples ├── tag0137.relaxed.al.pdb ├── tag0172.relaxed.al.pdb └── 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