├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── __init__.py ├── docs ├── Makefile ├── build │ ├── doctrees │ │ ├── environment.pickle │ │ ├── index.doctree │ │ ├── thermo.gpumd.doctree │ │ ├── thermo.lammps.doctree │ │ ├── thermo.shared.doctree │ │ └── thermo.tools.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _modules │ │ ├── index.html │ │ └── thermo │ │ │ ├── gpumd │ │ │ ├── calc.html │ │ │ ├── data.html │ │ │ ├── io.html │ │ │ └── preproc.html │ │ │ ├── lammps │ │ │ ├── calc.html │ │ │ ├── data.html │ │ │ └── io.html │ │ │ ├── shared │ │ │ └── force.html │ │ │ └── tools │ │ │ └── lj.html │ │ ├── _sources │ │ ├── index.rst.txt │ │ ├── thermo.gpumd.rst.txt │ │ ├── thermo.lammps.rst.txt │ │ ├── thermo.shared.rst.txt │ │ └── thermo.tools.rst.txt │ │ ├── _static │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ └── theme.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── fonts │ │ │ ├── Inconsolata-Bold.ttf │ │ │ ├── Inconsolata-Regular.ttf │ │ │ ├── Inconsolata.ttf │ │ │ ├── Lato-Bold.ttf │ │ │ ├── Lato-Regular.ttf │ │ │ ├── Lato │ │ │ │ ├── lato-bold.eot │ │ │ │ ├── lato-bold.ttf │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-bolditalic.eot │ │ │ │ ├── lato-bolditalic.ttf │ │ │ │ ├── lato-bolditalic.woff │ │ │ │ ├── lato-bolditalic.woff2 │ │ │ │ ├── lato-italic.eot │ │ │ │ ├── lato-italic.ttf │ │ │ │ ├── lato-italic.woff │ │ │ │ ├── lato-italic.woff2 │ │ │ │ ├── lato-regular.eot │ │ │ │ ├── lato-regular.ttf │ │ │ │ ├── lato-regular.woff │ │ │ │ └── lato-regular.woff2 │ │ │ ├── RobotoSlab-Bold.ttf │ │ │ ├── RobotoSlab-Regular.ttf │ │ │ ├── RobotoSlab │ │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ │ └── roboto-slab-v7-regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ └── fontawesome-webfont.woff2 │ │ ├── jquery-3.4.1.js │ │ ├── jquery.js │ │ ├── js │ │ │ ├── modernizr.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ └── underscore.js │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── thermo.gpumd.html │ │ ├── thermo.lammps.html │ │ ├── thermo.shared.html │ │ └── thermo.tools.html ├── make.bat └── source │ ├── conf.py │ ├── index.rst │ ├── thermo.gpumd.rst │ ├── thermo.lammps.rst │ ├── thermo.shared.rst │ └── thermo.tools.rst ├── requirements.txt ├── setup.py └── thermo ├── __init__.py ├── data ├── UFF.params └── readme.md ├── gpumd ├── __init__.py ├── calc.py ├── common.py ├── data.py ├── io.py └── preproc.py ├── lammps 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