├── LICENSE ├── README.md ├── Rakefile ├── identify_tss_peaks.sh └── scripts ├── bed2peakBed9.sh ├── bed2peakBed9_with_boundaryTrimming.sh ├── ctssBed2TpmBigWig.sh ├── ctssBed2bigWig.sh ├── decompose_peakclustering.R ├── getCtssCountsTable.sh ├── largeMergeBed.sh ├── myFastICA.R └── qsub.sh /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/README.md -------------------------------------------------------------------------------- /Rakefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/Rakefile -------------------------------------------------------------------------------- /identify_tss_peaks.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/identify_tss_peaks.sh -------------------------------------------------------------------------------- /scripts/bed2peakBed9.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/bed2peakBed9.sh -------------------------------------------------------------------------------- /scripts/bed2peakBed9_with_boundaryTrimming.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/bed2peakBed9_with_boundaryTrimming.sh -------------------------------------------------------------------------------- /scripts/ctssBed2TpmBigWig.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/ctssBed2TpmBigWig.sh -------------------------------------------------------------------------------- /scripts/ctssBed2bigWig.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/ctssBed2bigWig.sh -------------------------------------------------------------------------------- /scripts/decompose_peakclustering.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/decompose_peakclustering.R -------------------------------------------------------------------------------- /scripts/getCtssCountsTable.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/getCtssCountsTable.sh -------------------------------------------------------------------------------- /scripts/largeMergeBed.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/largeMergeBed.sh -------------------------------------------------------------------------------- /scripts/myFastICA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/myFastICA.R -------------------------------------------------------------------------------- /scripts/qsub.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hkawaji/dpi1/HEAD/scripts/qsub.sh --------------------------------------------------------------------------------