├── README.md ├── RSS.R ├── Reconstruct_dynamics.R ├── SCODE.R ├── SCODE.jl ├── averageA.R ├── data ├── exp_test.txt ├── exp_train.txt ├── init.txt ├── reference_TFTF_network.txt ├── tf.txt ├── time_test.txt └── time_train.txt ├── data2 ├── data.txt ├── reference_TFTF_network.txt ├── tf.txt └── time.txt ├── data3 ├── data.txt ├── reference_TFTF_network.txt ├── tf.txt └── time.txt ├── run_R.rb └── run_julia.rb /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/README.md -------------------------------------------------------------------------------- /RSS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/RSS.R -------------------------------------------------------------------------------- /Reconstruct_dynamics.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/Reconstruct_dynamics.R -------------------------------------------------------------------------------- /SCODE.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/SCODE.R -------------------------------------------------------------------------------- /SCODE.jl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/SCODE.jl -------------------------------------------------------------------------------- /averageA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/averageA.R -------------------------------------------------------------------------------- /data/exp_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/exp_test.txt -------------------------------------------------------------------------------- /data/exp_train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/exp_train.txt -------------------------------------------------------------------------------- /data/init.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/init.txt -------------------------------------------------------------------------------- /data/reference_TFTF_network.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/reference_TFTF_network.txt -------------------------------------------------------------------------------- /data/tf.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/tf.txt -------------------------------------------------------------------------------- /data/time_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/time_test.txt -------------------------------------------------------------------------------- /data/time_train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data/time_train.txt -------------------------------------------------------------------------------- /data2/data.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data2/data.txt -------------------------------------------------------------------------------- /data2/reference_TFTF_network.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data2/reference_TFTF_network.txt -------------------------------------------------------------------------------- /data2/tf.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data2/tf.txt -------------------------------------------------------------------------------- /data2/time.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data2/time.txt -------------------------------------------------------------------------------- /data3/data.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data3/data.txt -------------------------------------------------------------------------------- /data3/reference_TFTF_network.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data3/reference_TFTF_network.txt -------------------------------------------------------------------------------- /data3/tf.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data3/tf.txt -------------------------------------------------------------------------------- /data3/time.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/data3/time.txt -------------------------------------------------------------------------------- /run_R.rb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/run_R.rb -------------------------------------------------------------------------------- /run_julia.rb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hmatsu1226/SCODE/HEAD/run_julia.rb --------------------------------------------------------------------------------