├── .gitignore ├── Color_normalization.py ├── Interpretation.ipynb ├── Multi-omics characterization ├── Train.py ├── smooth-topk │ ├── LICENSE │ ├── build │ │ └── lib │ │ │ └── topk │ │ │ ├── __init__.py │ │ │ ├── functional.py │ │ │ ├── logarithm.py │ │ │ ├── polynomial │ │ │ ├── __init__.py │ │ │ ├── divide_conquer.py │ │ │ ├── grad.py │ │ │ ├── multiplication.py │ │ │ └── sp.py │ │ │ ├── svm.py │ │ │ └── utils.py │ ├── dist │ │ └── topk-1.0-py3.6.egg │ ├── experiments │ │ ├── cli.py │ │ ├── data │ │ │ ├── __init__.py │ │ │ ├── main.py │ │ │ └── utils.py │ │ ├── epoch.py │ │ ├── loss.py │ │ ├── main.py │ │ ├── models │ │ │ ├── __init__.py │ │ │ ├── cifar.py │ │ │ ├── densenet.py │ │ │ ├── main.py │ │ │ └── parser.py │ │ ├── scripts │ │ │ ├── cifar100_noise_ce.sh │ │ │ ├── cifar100_noise_svm.sh │ │ │ ├── eval.py │ │ │ ├── imagenet_split.py │ │ │ ├── imagenet_subsets_ce.sh │ │ │ ├── imagenet_subsets_svm.sh │ │ │ └── perf.py │ │ └── utils.py │ ├── requirements.txt │ ├── setup.py │ ├── tests │ │ ├── py_ref.py │ │ ├── test_log.py │ │ ├── test_losses.py │ │ ├── test_sum_product.py │ │ └── utils.py │ ├── topk.egg-info │ │ ├── PKG-INFO │ │ ├── SOURCES.txt │ │ ├── dependency_links.txt │ │ ├── requires.txt │ │ └── top_level.txt │ └── topk │ │ ├── __init__.py │ │ ├── functional.py │ │ ├── logarithm.py │ │ ├── polynomial │ │ ├── __init__.py │ │ ├── divide_conquer.py │ │ ├── grad.py │ │ ├── multiplication.py │ │ └── sp.py │ │ ├── svm.py │ │ └── utils.py ├── util │ ├── Dataset.py │ ├── EMA.py │ ├── Epoch.py │ ├── TransformerMIL.py │ ├── __init__.py │ ├── __pycache__ │ │ ├── Dataset.cpython-36.pyc │ │ ├── EMA.cpython-36.pyc │ │ ├── Epoch.cpython-36.pyc │ │ ├── Epoch_new.cpython-36.pyc │ │ ├── TransformerMIL.cpython-36.pyc │ │ ├── __init__.cpython-36.pyc │ │ └── meter.cpython-36.pyc │ ├── meter.py │ └── stitch.py └── validate.py ├── README.md ├── Survival Prediction └── survival_prediction.ipynb ├── Tiling.py └── Tumor_detection.ipynb /.gitignore: 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