├── LICENSE ├── README.md ├── example ├── example_classes.txt ├── example_motifs.txt └── example_sequence.fa ├── install ├── conda │ ├── INSTALL.sh │ ├── environment.yml │ └── setup.py └── docker │ ├── Dockerfile │ ├── build.sh │ ├── requirements.txt │ ├── run_docker.sh │ └── setup.py ├── motifscope ├── mscope ├── __init__.py ├── motif_plot.py ├── multiseq_align.py └── util.py └── paper_scripts ├── edit_distance.py ├── local_assembly.sh ├── motif_overlap.py └── reads_extraction.sh /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/holstegelab/MotifScope/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/holstegelab/MotifScope/HEAD/README.md -------------------------------------------------------------------------------- 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