├── .gitignore ├── LICENSE ├── README.md ├── SpaceFlow ├── SpaceFlow.py ├── __init__.py └── util.py ├── images ├── annotation.png ├── domain_segmentation.png └── pSM.png ├── pyproject.toml ├── requirements.txt ├── setup.cfg ├── test.py └── tutorials └── seqfish_mouse_embryogenesis.ipynb /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/README.md -------------------------------------------------------------------------------- /SpaceFlow/SpaceFlow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/SpaceFlow/SpaceFlow.py -------------------------------------------------------------------------------- /SpaceFlow/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /SpaceFlow/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/SpaceFlow/util.py -------------------------------------------------------------------------------- /images/annotation.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/images/annotation.png -------------------------------------------------------------------------------- /images/domain_segmentation.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/images/domain_segmentation.png -------------------------------------------------------------------------------- /images/pSM.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/images/pSM.png -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/setup.cfg -------------------------------------------------------------------------------- /test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/test.py -------------------------------------------------------------------------------- /tutorials/seqfish_mouse_embryogenesis.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hongleir/SpaceFlow/HEAD/tutorials/seqfish_mouse_embryogenesis.ipynb --------------------------------------------------------------------------------