├── .gitignore ├── .hgignore ├── .nojekyll ├── ChangeLog ├── LICENSE ├── MANIFEST.in ├── README.md ├── bin └── scitools ├── doc ├── api │ └── html │ │ ├── .buildinfo │ │ ├── BoxField.html │ │ ├── BoxGrid.html │ │ ├── EfficiencyTable.html │ │ ├── FloatComparison.html │ │ ├── Lumpy.html │ │ ├── MovingPlotWindow.html │ │ ├── NumPyDB.html │ │ ├── PrmDictBase.html │ │ ├── Regression.html │ │ ├── StringFunction.html │ │ ├── TkGUI.html │ │ ├── _modules │ │ ├── index.html │ │ └── scitools │ │ │ ├── BoxField.html │ │ │ ├── BoxGrid.html │ │ │ ├── EfficiencyTable.html │ │ │ ├── FloatComparison.html │ │ │ ├── Lumpy.html │ │ │ ├── MovingPlotWindow.html │ │ │ ├── NumPyDB.html │ │ │ ├── PrmDictBase.html │ │ │ ├── Regression.html │ │ │ ├── StringFunction.html │ │ │ ├── TkGUI.html │ │ │ ├── aplotter.html │ │ │ ├── avplotter.html │ │ │ ├── configdata.html │ │ │ ├── convergencerate.html │ │ │ ├── debug.html │ │ │ ├── easyviz │ │ │ ├── blt_.html │ │ │ ├── common.html │ │ │ ├── gnuplot_.html │ │ │ ├── grace_.html │ │ │ ├── matlab2_.html │ │ │ ├── matlab_.html │ │ │ ├── matplotlib_.html │ │ │ ├── movie.html │ │ │ ├── pyx_.html │ │ │ ├── template_.html │ │ │ ├── utils.html │ │ │ ├── vtk_.html │ │ │ └── vtk_new_.html │ │ │ ├── errorcheck.html │ │ │ ├── filetable.html │ │ │ ├── misc.html │ │ │ ├── modulecheck.html │ │ │ ├── multipleloop.html │ │ │ ├── numpytools.html │ │ │ ├── numpyutils.html │ │ │ ├── pprint2.html │ │ │ ├── redirect_io.html │ │ │ └── sound.html │ │ ├── _sources │ │ ├── BoxField.txt │ │ ├── BoxGrid.txt │ │ ├── EfficiencyTable.txt │ │ ├── FloatComparison.txt │ │ ├── Lumpy.txt │ │ ├── MovingPlotWindow.txt │ │ ├── NumPyDB.txt │ │ ├── PrmDictBase.txt │ │ ├── Regression.txt │ │ ├── StringFunction.txt │ │ ├── TkGUI.txt │ │ ├── aplotter.txt │ │ ├── avplotter.txt │ │ ├── basics.txt │ │ ├── blt_.txt │ │ ├── common.txt │ │ ├── configdata.txt │ │ ├── convergencerate.txt │ │ ├── debug.txt │ │ ├── dx_.txt │ │ ├── easyviz.txt │ │ ├── errorcheck.txt │ │ ├── filetable.txt │ │ ├── globaldata.txt │ │ ├── gnuplot_.txt │ │ ├── grace_.txt │ │ ├── index.txt │ │ ├── matlab2_.txt │ │ ├── matlab_.txt │ │ ├── matplotlib_.txt │ │ ├── misc.txt │ │ ├── modulecheck.txt │ │ ├── movie.txt │ │ ├── multipleloop.txt │ │ ├── numpytools.txt │ │ ├── numpyutils.txt │ │ ├── pprint2.txt │ │ ├── pyx_.txt │ │ ├── redirect_io.txt │ │ ├── scitools.txt │ │ ├── sound.txt │ │ ├── std.txt │ │ ├── template_.txt │ │ ├── utils.txt │ │ ├── veusz_.txt │ │ ├── visit_.txt │ │ ├── vtk_.txt │ │ └── vtk_new_.txt │ │ ├── _static │ │ ├── ajax-loader.gif │ │ ├── basic.css │ │ ├── comment-bright.png │ │ ├── comment-close.png │ │ ├── comment.png │ │ ├── default.css │ │ ├── doctools.js │ │ ├── down-pressed.png │ │ ├── down.png │ │ ├── file.png │ │ ├── jquery.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── scitools_logo.jpg │ │ ├── searchtools.js │ │ ├── sidebar.js │ │ ├── underscore.js │ │ ├── up-pressed.png │ │ ├── up.png │ │ └── websupport.js │ │ ├── aplotter.html │ │ ├── avplotter.html │ │ ├── basics.html │ │ ├── blt_.html │ │ ├── common.html │ │ ├── configdata.html │ │ ├── convergencerate.html │ │ ├── debug.html │ │ ├── dx_.html │ │ ├── easyviz.html │ │ ├── errorcheck.html │ │ ├── figs │ │ ├── contour3_ex1.eps │ │ ├── contour3_ex1.png │ │ ├── contour_ex1.eps │ │ ├── contour_ex1.png │ │ ├── contour_ex2.eps │ │ ├── contour_ex2.png │ │ ├── contour_ex3.eps │ │ ├── contour_ex3.png │ │ ├── contourf_ex1.eps │ │ ├── contourf_ex1.png │ │ ├── contourslice1.eps │ │ ├── contourslice1.png │ │ ├── contourslice3.eps │ │ ├── contourslice3.png │ │ ├── isosurface1.eps │ │ ├── isosurface1.png │ │ ├── isosurface2.eps │ │ ├── isosurface2.png │ │ ├── mesh_ex1.eps │ │ ├── mesh_ex1.png │ │ ├── meshc_ex1.eps │ │ ├── meshc_ex1.png │ │ ├── pcolor_ex1.eps │ │ ├── pcolor_ex1.png │ │ ├── plot1a.eps │ │ ├── plot1a.png │ │ ├── plot1c.eps │ │ ├── plot1c.png │ │ ├── plot2a.eps │ │ ├── plot2a.png │ │ ├── plot2c.eps │ │ ├── plot2c.png │ │ ├── plot2e.eps │ │ ├── plot2f.eps │ │ ├── plot2f.png │ │ ├── plot2g.eps │ │ ├── plot2g.png │ │ ├── plot2i.eps │ │ ├── plot2i.png │ │ ├── plot2l.eps │ │ ├── plot2l.png │ │ ├── plot3.eps │ │ ├── plot3.png │ │ ├── plot4.eps │ │ ├── plot4.png │ │ ├── pyranking.eps │ │ ├── pyranking.png │ │ ├── quiver3_ex1.eps │ │ ├── quiver3_ex1.png │ │ ├── quiver_ex1.eps │ │ ├── quiver_ex1.png │ │ ├── quiver_ex2.eps │ │ ├── quiver_ex2.png │ │ ├── quiver_ex3.eps │ │ ├── quiver_ex3.png │ │ ├── slice1.eps │ │ ├── slice1.png │ │ ├── streamline_ex1.eps │ │ ├── streamline_ex1.jpeg │ │ ├── streamline_ex1.png │ │ ├── streamribbon_ex1.eps │ │ ├── streamribbon_ex1.png │ │ ├── streamtube_ex1.eps │ │ ├── streamtube_ex1.png │ │ ├── surf_ex1.eps │ │ ├── surf_ex1.png │ │ ├── surf_ex2.eps │ │ ├── surf_ex2.png │ │ ├── surfc_ex1.eps │ │ └── surfc_ex1.png │ │ ├── filetable.html │ │ ├── genindex.html │ │ ├── globaldata.html │ │ ├── gnuplot_.html │ │ ├── grace_.html │ │ ├── html │ │ ├── .buildinfo │ │ ├── BoxField.html │ │ ├── BoxGrid.html │ │ ├── EfficiencyTable.html │ │ ├── FloatComparison.html │ │ ├── Lumpy.html │ │ ├── MovingPlotWindow.html │ │ ├── NumPyDB.html │ │ ├── PrmDictBase.html │ │ ├── Regression.html │ │ ├── StringFunction.html │ │ ├── TkGUI.html │ │ ├── _modules │ │ │ ├── index.html │ │ │ └── scitools │ │ │ │ ├── BoxField.html │ │ │ │ ├── BoxGrid.html │ │ │ │ ├── EfficiencyTable.html │ │ │ │ ├── FloatComparison.html │ │ │ │ ├── Lumpy.html │ │ │ │ ├── MovingPlotWindow.html │ │ │ │ ├── NumPyDB.html │ │ │ │ ├── PrmDictBase.html │ │ │ │ ├── Regression.html │ │ │ │ ├── StringFunction.html │ │ │ │ ├── TkGUI.html │ │ │ │ ├── aplotter.html │ │ │ │ ├── configdata.html │ │ │ │ ├── convergencerate.html │ │ │ │ ├── debug.html │ │ │ │ ├── easyviz │ │ │ │ ├── blt_.html │ │ │ │ ├── common.html │ │ │ │ ├── gnuplot_.html │ │ │ │ ├── grace_.html │ │ │ │ ├── matlab2_.html │ │ │ │ ├── matlab_.html │ │ │ │ ├── matplotlib_.html │ │ │ │ ├── movie.html │ │ │ │ ├── pyx_.html │ │ │ │ ├── template_.html │ │ │ │ ├── utils.html │ │ │ │ └── vtk_.html │ │ │ │ ├── errorcheck.html │ │ │ │ ├── filetable.html │ │ │ │ ├── misc.html │ │ │ │ ├── modulecheck.html │ │ │ │ ├── multipleloop.html │ │ │ │ ├── numpytools.html │ │ │ │ ├── numpyutils.html │ │ │ │ ├── pprint2.html │ │ │ │ ├── redirect_io.html │ │ │ │ └── sound.html │ │ ├── _sources │ │ │ ├── BoxField.txt │ │ │ ├── BoxGrid.txt │ │ │ ├── EfficiencyTable.txt │ │ │ ├── FloatComparison.txt │ │ │ ├── Lumpy.txt │ │ │ ├── MovingPlotWindow.txt │ │ │ ├── NumPyDB.txt │ │ │ ├── PrmDictBase.txt │ │ │ ├── Regression.txt │ │ │ ├── StringFunction.txt │ │ │ ├── TkGUI.txt │ │ │ ├── aplotter.txt │ │ │ ├── avplotter.txt │ │ │ ├── basics.txt │ │ │ ├── blt_.txt │ │ │ ├── common.txt │ │ │ ├── configdata.txt │ │ │ ├── convergencerate.txt │ │ │ ├── debug.txt │ │ │ ├── dx_.txt │ │ │ ├── easyviz.txt │ │ │ ├── errorcheck.txt │ │ │ ├── filetable.txt │ │ │ ├── globaldata.txt │ │ │ ├── gnuplot_.txt │ │ │ ├── grace_.txt │ │ │ ├── index.txt │ │ │ ├── matlab2_.txt │ │ │ ├── matlab_.txt │ │ │ ├── matplotlib_.txt │ │ │ ├── misc.txt │ │ │ ├── modulecheck.txt │ │ │ ├── movie.txt │ │ │ ├── multipleloop.txt │ │ │ ├── numpytools.txt │ │ │ ├── numpyutils.txt │ │ │ ├── pprint2.txt │ │ │ ├── pyx_.txt │ │ │ ├── redirect_io.txt │ │ │ ├── scitools.txt │ │ │ ├── sound.txt │ │ │ ├── std.txt │ │ │ ├── template_.txt │ │ │ ├── utils.txt │ │ │ ├── veusz_.txt │ │ │ ├── visit_.txt │ │ │ ├── vtk_.txt │ │ │ └── vtk_new_.txt │ │ ├── _static │ │ │ ├── ajax-loader.gif │ │ │ ├── basic.css │ │ │ ├── comment-bright.png │ │ │ ├── comment-close.png │ │ │ ├── comment.png │ │ │ ├── default.css │ │ │ ├── doctools.js │ │ │ ├── down-pressed.png │ │ │ ├── down.png │ │ │ ├── file.png │ │ │ ├── jquery.js │ │ │ ├── minus.png │ │ │ ├── plus.png │ │ │ ├── pygments.css │ │ │ ├── scitools_logo.jpg │ │ │ ├── searchtools.js │ │ │ ├── sidebar.js │ │ │ ├── underscore.js │ │ │ ├── up-pressed.png │ │ │ ├── up.png │ │ │ └── websupport.js │ │ ├── aplotter.html │ │ ├── avplotter.html │ │ ├── basics.html │ │ ├── blt_.html │ │ ├── common.html │ │ ├── configdata.html │ │ ├── convergencerate.html │ │ ├── debug.html │ │ ├── dx_.html │ │ ├── easyviz.html │ │ ├── errorcheck.html │ │ ├── filetable.html │ │ ├── genindex.html │ │ ├── globaldata.html │ │ ├── gnuplot_.html │ │ ├── grace_.html │ │ ├── index.html │ │ ├── matlab2_.html │ │ ├── matlab_.html │ │ ├── matplotlib_.html │ │ ├── misc.html │ │ ├── modulecheck.html │ │ ├── movie.html │ │ ├── multipleloop.html │ │ ├── np-modindex.html │ │ ├── numpytools.html │ │ ├── numpyutils.html │ │ ├── objects.inv │ │ ├── pprint2.html │ │ ├── py-modindex.html │ │ ├── pyx_.html │ │ ├── redirect_io.html │ │ ├── scitools.html │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── sound.html │ │ ├── std.html │ │ ├── template_.html │ │ ├── utils.html │ │ ├── veusz_.html │ │ ├── visit_.html │ │ ├── vtk_.html │ │ └── vtk_new_.html │ │ ├── index.html │ │ ├── matlab2_.html │ │ ├── matlab_.html │ │ ├── matplotlib_.html │ │ ├── misc.html │ │ ├── modindex.html │ │ ├── modulecheck.html │ │ ├── movie.html │ │ ├── multipleloop.html │ │ ├── np-modindex.html │ │ ├── numpytools.html │ │ ├── numpyutils.html │ │ ├── objects.inv │ │ ├── pprint2.html │ │ ├── py-modindex.html │ │ ├── pyx_.html │ │ ├── redirect_io.html │ │ ├── scitools.html │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── sound.html │ │ ├── std.html │ │ ├── template_.html │ │ ├── utils.html │ │ ├── veusz_.html │ │ ├── visit_.html │ │ ├── vtk_.html │ │ └── vtk_new_.html ├── easyviz │ ├── easyviz.do.txt │ ├── easyviz.gwiki │ ├── easyviz.html │ ├── easyviz.pdf │ ├── easyviz.txt │ ├── easyviz_rst.html │ ├── easyviz_sphinx.pdf │ ├── easyviz_sphinx_html │ │ ├── .buildinfo │ │ ├── _sources │ │ │ └── index.txt │ │ ├── _static │ │ │ ├── ajax-loader.gif │ │ │ ├── basic.css │ │ │ ├── comment-bright.png │ │ │ ├── comment-close.png │ │ │ ├── comment.png │ │ │ ├── default.css │ │ │ ├── doctools.js │ │ │ ├── down-pressed.png │ │ │ ├── down.png │ │ │ ├── file.png │ │ │ ├── jquery.js │ │ │ ├── minus.png │ │ │ ├── plus.png │ │ │ ├── pygments.css │ │ │ ├── searchtools.js │ │ │ ├── sidebar.js │ │ │ ├── underscore.js │ │ │ ├── up-pressed.png │ │ │ ├── up.png │ │ │ └── websupport.js │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── search.html │ │ ├── searchindex.js │ │ └── tmp_easyviz.html │ └── figs │ │ ├── contour3_ex1.png │ │ ├── contour_ex1.png │ │ ├── contour_ex2.png │ │ ├── contour_ex3.png │ │ ├── contourf_ex1.png │ │ ├── contourslice1.png │ │ ├── contourslice3.png │ │ ├── isosurface1.png │ │ ├── isosurface2.png │ │ ├── mesh_ex1.png │ │ ├── meshc_ex1.png │ │ ├── pcolor_ex1.png │ │ ├── plot1a.png │ │ ├── plot1c.png │ │ ├── plot2a.png │ │ ├── plot2c.png │ │ ├── plot2f.png │ │ ├── plot2g.png │ │ ├── plot2i.png │ │ ├── plot2l.png │ │ ├── pyranking.png │ │ ├── quiver3_ex1.png │ │ ├── quiver_ex1.png │ │ ├── quiver_ex2.png │ │ ├── quiver_ex3.png │ │ ├── slice1.png │ │ ├── streamline_ex1.jpeg │ │ ├── streamline_ex1.png │ │ ├── streamribbon_ex1.png │ │ ├── streamtube_ex1.png │ │ ├── surf_ex1.png │ │ ├── surf_ex2.png │ │ └── surfc_ex1.png ├── man │ └── man1 │ │ └── scitools.1.gz ├── src │ ├── api-sphinx │ │ ├── 00README │ │ ├── BoxField.txt │ │ ├── BoxGrid.txt │ │ ├── EfficiencyTable.txt │ │ ├── FloatComparison.txt │ │ ├── Lumpy.txt │ │ ├── Makefile │ │ ├── MovingPlotWindow.txt │ │ ├── NumPyDB.txt │ │ ├── PrmDictBase.txt │ │ ├── Regression.txt │ │ ├── StringFunction.txt │ │ ├── TkGUI.txt │ │ ├── aplotter.txt │ │ ├── avplotter.txt │ │ ├── basics.txt │ │ ├── blt_.txt │ │ ├── clean.sh │ │ ├── common.txt │ │ ├── conf.py │ │ ├── conf.py-orig │ │ ├── configdata.txt │ │ ├── convergencerate.txt │ │ ├── debug.txt │ │ ├── dx_.txt │ │ ├── easyviz.txt │ │ ├── errorcheck.txt │ │ ├── filetable.txt │ │ ├── generate.sh │ │ ├── globaldata.txt │ │ ├── gnuplot_.txt │ │ ├── grace_.txt │ │ ├── index.txt │ │ ├── index.txt-orig │ │ ├── make_txt.py │ │ ├── matlab2_.txt │ │ ├── matlab_.txt │ │ ├── matplotlib_.txt │ │ ├── misc.txt │ │ ├── modulecheck.txt │ │ ├── movie.txt │ │ ├── multipleloop.txt │ │ ├── numpytools.txt │ │ ├── numpyutils.txt │ │ ├── pprint2.txt │ │ ├── pyx_.txt │ │ ├── redirect_io.txt │ │ ├── scitools.txt │ │ ├── scitools_logo.jpg │ │ ├── sound.txt │ │ ├── std.txt │ │ ├── template_.txt │ │ ├── update.sh │ │ ├── utils.txt │ │ ├── veusz_.txt │ │ ├── visit_.txt │ │ ├── vtk_.txt │ │ └── vtk_new_.txt │ ├── clean.sh │ └── easyviz │ │ ├── .ptex2tex.cfg │ │ ├── clean.sh │ │ ├── easyviz.do.txt │ │ ├── easyviz_2D3D.do.txt │ │ ├── easyviz_backends.do.txt │ │ ├── easyviz_bars.do.txt │ │ ├── easyviz_design.do.txt │ │ ├── easyviz_install.do.txt │ │ ├── easyviz_intro.do.txt │ │ ├── easyviz_trouble.do.txt │ │ ├── easyviz_tutorial.do.txt │ │ ├── figs │ │ ├── contour3_ex1.eps │ │ ├── contour3_ex1.png │ │ ├── contour_ex1.eps │ │ ├── contour_ex1.png │ │ ├── contour_ex2.eps │ │ ├── contour_ex2.png │ │ ├── contour_ex3.eps │ │ ├── contour_ex3.png │ │ ├── contourf_ex1.eps │ │ ├── contourf_ex1.png │ │ ├── contourslice1.eps │ │ ├── contourslice1.png │ │ ├── contourslice3.eps │ │ ├── contourslice3.png │ │ ├── isosurface1.eps │ │ ├── isosurface1.png │ │ ├── isosurface2.eps │ │ ├── isosurface2.png │ │ ├── mesh_ex1.eps │ │ ├── mesh_ex1.png │ │ ├── meshc_ex1.eps │ │ ├── meshc_ex1.png │ │ ├── pcolor_ex1.eps │ │ ├── pcolor_ex1.png │ │ ├── plot1a.eps │ │ ├── plot1a.png │ │ ├── plot1a2.eps │ │ ├── plot1a2.png │ │ ├── plot1a_g.eps │ │ ├── plot1a_g.png │ │ ├── plot1a_m.eps │ │ ├── plot1a_m.png │ │ ├── plot1c.eps │ │ ├── plot1c.png │ │ ├── plot1d.eps │ │ ├── plot1d.png │ │ ├── plot1e.eps │ │ ├── plot1e.png │ │ ├── plot2a.eps │ │ ├── plot2a.png │ │ ├── plot2c.eps │ │ ├── plot2c.png │ │ ├── plot2e.eps │ │ ├── plot2f.eps │ │ ├── plot2f.png │ │ ├── plot2g.eps │ │ ├── plot2g.png │ │ ├── plot2i.eps │ │ ├── plot2i.png │ │ ├── plot2l.eps │ │ ├── plot2l.png │ │ ├── plot2p.eps │ │ ├── plot2p.png │ │ ├── plot2q.eps │ │ ├── plot2q.png │ │ ├── plot3_demo.eps │ │ ├── plot3_demo.png │ │ ├── pyranking.eps │ │ ├── pyranking.png │ │ ├── quiver3_ex1.eps │ │ ├── quiver3_ex1.png │ │ ├── quiver_ex1.eps │ │ ├── quiver_ex1.png │ │ ├── quiver_ex2.eps │ │ ├── quiver_ex2.png │ │ ├── quiver_ex3.eps │ │ ├── quiver_ex3.png │ │ ├── slice1.eps │ │ ├── slice1.png │ │ ├── streamline_ex1.eps │ │ ├── streamline_ex1.jpeg │ │ ├── streamline_ex1.png │ │ ├── streamribbon_ex1.eps │ │ ├── streamribbon_ex1.png │ │ ├── streamtube_ex1.eps │ │ ├── streamtube_ex1.png │ │ ├── surf_ex1.eps │ │ ├── surf_ex1.png │ │ ├── surf_ex2.eps │ │ ├── surf_ex2.png │ │ ├── surfc_ex1.eps │ │ └── surfc_ex1.png │ │ ├── index-sphinx │ │ └── make.sh └── web │ ├── index.html │ ├── javascripts │ └── main.js │ ├── params.json │ └── stylesheets │ ├── github-light.css │ └── stylesheet.css ├── examples ├── README ├── axes_demo.py ├── bar_demo.py ├── clean.sh ├── compatibility_checks.py ├── contour_demo.py ├── contourslice_demo1.py ├── contourslice_demo2.py ├── demo_pyreport.py ├── demo_pyreport.sh ├── fill_demo.py ├── grab_backend_demo.py ├── grab_backend_matplotlib_ex1.py ├── grab_backend_matplotlib_ex2.py ├── isosurface_demo1.py ├── isosurface_demo2.py ├── isosurface_demo3.py ├── math_text.py ├── matlab2_demo.py ├── mesh_demo.py ├── movie_demo1.py ├── movie_demo2.py ├── mri_matlab_v6.mat ├── plot0a.py ├── plot0b.py ├── plot1a.py ├── plot1a2.py ├── plot1b.py ├── plot1c.py ├── plot1d.py ├── plot1e.py ├── plot2a.py ├── plot2b.py ├── plot2c.py ├── plot2d.py ├── plot2e.py ├── plot2f.py ├── plot2g.py ├── plot2i.py ├── plot2j.py ├── plot2k.py ├── plot2l.py ├── plot2m.py ├── plot2n.py ├── plot2o.py ├── plot2p.py ├── plot2q.py ├── plot2r.py ├── plot3_demo.py ├── plot_ascii.py ├── problems_aspect_colorbar.py ├── quiver_demo1.py ├── quiver_demo2.py ├── rotate_vector.py ├── rows_of_matrix.py ├── runall.py ├── slice_demo1.py ├── slice_demo2.py ├── streamline_demo1.py ├── streamline_demo2.py ├── streamline_demo3.py ├── streamribbon_demo1.py ├── streamribbon_demo2.py ├── streamtube_demo1.py ├── streamtube_demo2.py ├── subplot_demo.py ├── subplot_demo2.py ├── surf_demo0.py ├── surf_demo1.py ├── surf_demo2.py ├── topo_matlab_v6.mat └── wind_matlab_v6.mat ├── images ├── bg_hr.png ├── blacktocat.png ├── icon_download.png └── sprite_download.png ├── install_egg ├── lib ├── scitools │ ├── BoxField.py │ ├── BoxGrid.py │ ├── EfficiencyTable.py │ ├── FloatComparison.py │ ├── Heaviside.py │ ├── Lumpy.py │ ├── MovingPlotWindow.py │ ├── NumPyDB.py │ ├── ODE.py │ ├── PrmDictBase.py │ ├── Regression.py │ ├── StringFunction.py │ ├── TkGUI.py │ ├── _Gui.py │ ├── __init__.py │ ├── _numpyload.py │ ├── aplotter.py │ ├── avplotter.py │ ├── basics.py │ ├── configdata.py │ ├── convergencerate.py │ ├── debug.py │ ├── easyviz │ │ ├── __init__.p.py │ │ ├── __init__.py │ │ ├── blt_.py │ │ ├── common.py │ │ ├── dx_.py │ │ ├── gnuplot_.py │ │ ├── grace_.py │ │ ├── matlab2_.py │ │ ├── matlab_.py │ │ ├── matplotlib_.py │ │ ├── misc.py │ │ ├── movie.py │ │ ├── pyx_.py │ │ ├── template_.py │ │ ├── tests │ │ │ ├── easyviztest.py │ │ │ ├── runalltests.py │ │ │ ├── test_axis.py │ │ │ ├── test_box.py │ │ │ ├── test_caxis.py │ │ │ ├── test_colorbar.py │ │ │ ├── test_colormap.py │ │ │ ├── test_contour.py │ │ │ ├── test_contour3.py │ │ │ ├── test_grid.py │ │ │ ├── test_labels.py │ │ │ ├── test_legend.py │ │ │ ├── test_mesh.py │ │ │ ├── test_plot.py │ │ │ ├── test_plot3.py │ │ │ ├── test_quiver.py │ │ │ ├── test_subplot.py │ │ │ ├── test_surf.py │ │ │ └── test_view.py │ │ ├── utils.py │ │ ├── veusz_.py │ │ ├── visit_.py │ │ ├── vtk_.py │ │ └── vtk_new_.py │ ├── errorcheck.py │ ├── filetable.py │ ├── globaldata.py │ ├── materials.py │ ├── misc.py │ ├── modulecheck.py │ ├── multipleloop.py │ ├── numpytools.p.py │ ├── numpytools.py │ ├── numpyutils.py │ ├── pprint2.py │ ├── pyreport │ │ ├── __init__.py │ │ ├── code_hasher.py │ │ ├── main.py │ │ ├── options.py │ │ ├── pyreport.py │ │ ├── python_parser.py │ │ └── version.py │ ├── redirect_io.py │ ├── scitools.cfg │ ├── sound.py │ └── std.py └── stcopy │ └── __init__.py ├── misc ├── build_scitools++.py ├── diagnostic.py └── makedist ├── scitools++_setup.py ├── scitools.conf ├── setup.py ├── setupegg.py └── test ├── _cpu.py ├── _movie1.py ├── _test1.verify-test ├── clean.sh ├── scitools_demo ├── test_numpyutils.py ├── verify1.r └── verify1.verify /.gitignore: -------------------------------------------------------------------------------- 1 | # compiled files: 2 | *.o 3 | *.so 4 | *.a 5 | # temporary files: 6 | *.bak 7 | *.swp 8 | *~ 9 | .*~ 10 | *.old 11 | tmp* 12 | temp* 13 | .#* 14 | \#* 15 | # tex files: 16 | *.log 17 | *.dvi 18 | *.aux 19 | *.blg 20 | *.idx 21 | *.nav 22 | *.out 23 | *.toc 24 | *.snm 25 | *.vrb 26 | # eclipse files: 27 | *.cproject 28 | *.project 29 | # misc: 30 | .DS_Store 31 | -------------------------------------------------------------------------------- /.hgignore: -------------------------------------------------------------------------------- 1 | syntax: glob 2 | *~ 3 | *.pyc 4 | *.exe 5 | *.tar.gz 6 | 7 | syntax: regexp 8 | ^\.hg/ 9 | ^build/ 10 | -------------------------------------------------------------------------------- /.nojekyll: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hplgit/scitools/8df53a3a3bc95377f9fa85c04f3a329a0ec33e67/.nojekyll -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | recursive-include examples * 2 | recursive-include lib *.cfg 3 | recursive-include lib/scitools/easyviz/doc * 4 | recursive-include lib/scitools/easyviz/tests * 5 | include LICENSE 6 | include README 7 | include ChangeLog 8 | -------------------------------------------------------------------------------- /doc/api/html/.buildinfo: -------------------------------------------------------------------------------- 1 | # Sphinx build info version 1 2 | # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. 3 | config: d3ef6fb2ad3ba57cf9bacf9ec59adac6 4 | tags: fbb0d17656682115ca4d033fb2f83ba1 5 | -------------------------------------------------------------------------------- /doc/api/html/_sources/BoxField.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxField` 3 | ======================== 4 | 5 | .. automodule:: scitools.BoxField 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/BoxGrid.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxGrid` 3 | ======================= 4 | 5 | .. automodule:: scitools.BoxGrid 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/EfficiencyTable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.EfficiencyTable` 3 | =============================== 4 | 5 | .. automodule:: scitools.EfficiencyTable 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/FloatComparison.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.FloatComparison` 3 | =============================== 4 | 5 | .. automodule:: scitools.FloatComparison 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/Lumpy.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Lumpy` 3 | ===================== 4 | 5 | .. automodule:: scitools.Lumpy 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/MovingPlotWindow.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.MovingPlotWindow` 3 | ================================ 4 | 5 | .. automodule:: scitools.MovingPlotWindow 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/NumPyDB.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.NumPyDB` 3 | ======================= 4 | 5 | .. automodule:: scitools.NumPyDB 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/PrmDictBase.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.PrmDictBase` 3 | =========================== 4 | 5 | .. automodule:: scitools.PrmDictBase 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/Regression.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Regression` 3 | ========================== 4 | 5 | .. automodule:: scitools.Regression 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/StringFunction.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.StringFunction` 3 | ============================== 4 | 5 | .. automodule:: scitools.StringFunction 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/TkGUI.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.TkGUI` 3 | ===================== 4 | 5 | .. automodule:: scitools.TkGUI 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/aplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.aplotter` 3 | ======================== 4 | 5 | .. automodule:: scitools.aplotter 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/avplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.avplotter` 3 | ========================= 4 | 5 | .. automodule:: scitools.avplotter 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/basics.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.basics` 3 | ====================== 4 | 5 | .. automodule:: scitools.basics 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/blt_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.blt_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.blt_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/common.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.common` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.common 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/configdata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.configdata` 3 | ========================== 4 | 5 | .. automodule:: scitools.configdata 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/convergencerate.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.convergencerate` 3 | =============================== 4 | 5 | .. automodule:: scitools.convergencerate 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/debug.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.debug` 3 | ===================== 4 | 5 | .. automodule:: scitools.debug 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/dx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.dx_` 3 | =========================== 4 | 5 | .. automodule:: scitools.easyviz.dx_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/easyviz.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz` 3 | ======================= 4 | 5 | .. automodule:: scitools.easyviz 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/errorcheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.errorcheck` 3 | ========================== 4 | 5 | .. automodule:: scitools.errorcheck 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/filetable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.filetable` 3 | ========================= 4 | 5 | .. automodule:: scitools.filetable 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/globaldata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.globaldata` 3 | ========================== 4 | 5 | .. automodule:: scitools.globaldata 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/gnuplot_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.gnuplot_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.gnuplot_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/grace_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.grace_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.grace_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/index.txt: -------------------------------------------------------------------------------- 1 | 2 | SciTools Documentation 3 | ====================== 4 | 5 | Contents: 6 | 7 | .. toctree:: 8 | :maxdepth: 1 9 | 10 | scitools 11 | BoxField 12 | BoxGrid 13 | EfficiencyTable 14 | FloatComparison 15 | Lumpy 16 | NumPyDB 17 | PrmDictBase 18 | Regression 19 | StringFunction 20 | TkGUI 21 | avplotter 22 | aplotter 23 | basics 24 | configdata 25 | convergencerate 26 | debug 27 | errorcheck 28 | filetable 29 | globaldata 30 | misc 31 | modulecheck 32 | MovingPlotWindow 33 | multipleloop 34 | numpytools 35 | numpyutils 36 | pprint2 37 | redirect_io 38 | sound 39 | std 40 | easyviz 41 | blt_ 42 | common 43 | dx_ 44 | gnuplot_ 45 | grace_ 46 | matlab2_ 47 | matlab_ 48 | matplotlib_ 49 | misc 50 | movie 51 | pyx_ 52 | template_ 53 | utils 54 | veusz_ 55 | visit_ 56 | vtk_ 57 | vtk_new_ 58 | 59 | 60 | Indices and tables 61 | ================== 62 | 63 | * :ref:`genindex` 64 | * :ref:`modindex` 65 | * :ref:`search` 66 | 67 | -------------------------------------------------------------------------------- /doc/api/html/_sources/matlab2_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab2_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.matlab2_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/matlab_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab_` 3 | =============================== 4 | 5 | .. automodule:: scitools.easyviz.matlab_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/matplotlib_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matplotlib_` 3 | =================================== 4 | 5 | .. automodule:: scitools.easyviz.matplotlib_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/misc.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.misc` 3 | ==================== 4 | 5 | .. automodule:: scitools.misc 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/modulecheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.modulecheck` 3 | =========================== 4 | 5 | .. automodule:: scitools.modulecheck 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/movie.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.movie` 3 | ============================= 4 | 5 | .. automodule:: scitools.easyviz.movie 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/multipleloop.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.multipleloop` 3 | ============================ 4 | 5 | .. automodule:: scitools.multipleloop 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/numpytools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpytools` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpytools 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/numpyutils.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpyutils` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpyutils 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/pprint2.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.pprint2` 3 | ======================= 4 | 5 | .. automodule:: scitools.pprint2 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/pyx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.pyx_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.pyx_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/redirect_io.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.redirect_io` 3 | =========================== 4 | 5 | .. automodule:: scitools.redirect_io 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/scitools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools` 3 | =============== 4 | 5 | .. automodule:: scitools 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/sound.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.sound` 3 | ===================== 4 | 5 | .. automodule:: scitools.sound 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/std.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.std` 3 | =================== 4 | 5 | .. automodule:: scitools.std 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/template_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.template_` 3 | ================================= 4 | 5 | .. automodule:: scitools.easyviz.template_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/utils.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.utils` 3 | ============================= 4 | 5 | .. automodule:: scitools.easyviz.utils 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/api/html/_sources/veusz_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.veusz_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.veusz_ 6 | :members: 7 | 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When it is not found, a full rebuild will be done. 3 | config: 52ec0344a0bbb3a489006a7256d10f99 4 | tags: fbb0d17656682115ca4d033fb2f83ba1 5 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/BoxField.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxField` 3 | ======================== 4 | 5 | .. automodule:: scitools.BoxField 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/BoxGrid.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxGrid` 3 | ======================= 4 | 5 | .. automodule:: scitools.BoxGrid 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/EfficiencyTable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.EfficiencyTable` 3 | =============================== 4 | 5 | .. automodule:: scitools.EfficiencyTable 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/FloatComparison.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.FloatComparison` 3 | =============================== 4 | 5 | .. automodule:: scitools.FloatComparison 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/Lumpy.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Lumpy` 3 | ===================== 4 | 5 | .. automodule:: scitools.Lumpy 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/MovingPlotWindow.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.MovingPlotWindow` 3 | ================================ 4 | 5 | .. automodule:: scitools.MovingPlotWindow 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/NumPyDB.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.NumPyDB` 3 | ======================= 4 | 5 | .. automodule:: scitools.NumPyDB 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/PrmDictBase.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.PrmDictBase` 3 | =========================== 4 | 5 | .. automodule:: scitools.PrmDictBase 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/Regression.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Regression` 3 | ========================== 4 | 5 | .. automodule:: scitools.Regression 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/StringFunction.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.StringFunction` 3 | ============================== 4 | 5 | .. automodule:: scitools.StringFunction 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/TkGUI.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.TkGUI` 3 | ===================== 4 | 5 | .. automodule:: scitools.TkGUI 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/aplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.aplotter` 3 | ======================== 4 | 5 | .. automodule:: scitools.aplotter 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/avplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.avplotter` 3 | ========================= 4 | 5 | .. automodule:: scitools.avplotter 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/basics.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.basics` 3 | ====================== 4 | 5 | .. automodule:: scitools.basics 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/blt_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.blt_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.blt_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/common.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.common` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.common 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/configdata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.configdata` 3 | ========================== 4 | 5 | .. automodule:: scitools.configdata 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/convergencerate.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.convergencerate` 3 | =============================== 4 | 5 | .. automodule:: scitools.convergencerate 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/debug.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.debug` 3 | ===================== 4 | 5 | .. automodule:: scitools.debug 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/dx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.dx_` 3 | =========================== 4 | 5 | .. automodule:: scitools.easyviz.dx_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/easyviz.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz` 3 | ======================= 4 | 5 | .. automodule:: scitools.easyviz 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/errorcheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.errorcheck` 3 | ========================== 4 | 5 | .. automodule:: scitools.errorcheck 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/filetable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.filetable` 3 | ========================= 4 | 5 | .. automodule:: scitools.filetable 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/globaldata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.globaldata` 3 | ========================== 4 | 5 | .. automodule:: scitools.globaldata 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/gnuplot_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.gnuplot_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.gnuplot_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/grace_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.grace_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.grace_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/index.txt: -------------------------------------------------------------------------------- 1 | 2 | SciTools Documentation 3 | ====================== 4 | 5 | Contents: 6 | 7 | .. toctree:: 8 | :maxdepth: 1 9 | 10 | scitools 11 | BoxField 12 | BoxGrid 13 | EfficiencyTable 14 | FloatComparison 15 | Lumpy 16 | NumPyDB 17 | PrmDictBase 18 | Regression 19 | StringFunction 20 | TkGUI 21 | avplotter 22 | aplotter 23 | basics 24 | configdata 25 | convergencerate 26 | debug 27 | errorcheck 28 | filetable 29 | globaldata 30 | misc 31 | modulecheck 32 | MovingPlotWindow 33 | multipleloop 34 | numpytools 35 | numpyutils 36 | pprint2 37 | redirect_io 38 | sound 39 | std 40 | easyviz 41 | blt_ 42 | common 43 | dx_ 44 | gnuplot_ 45 | grace_ 46 | matlab2_ 47 | matlab_ 48 | matplotlib_ 49 | misc 50 | movie 51 | pyx_ 52 | template_ 53 | utils 54 | veusz_ 55 | visit_ 56 | vtk_ 57 | vtk_new_ 58 | 59 | 60 | Indices and tables 61 | ================== 62 | 63 | * :ref:`genindex` 64 | * :ref:`modindex` 65 | * :ref:`search` 66 | 67 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/matlab2_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab2_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.matlab2_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/matlab_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab_` 3 | =============================== 4 | 5 | .. automodule:: scitools.easyviz.matlab_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/matplotlib_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matplotlib_` 3 | =================================== 4 | 5 | .. automodule:: scitools.easyviz.matplotlib_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/misc.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.misc` 3 | ==================== 4 | 5 | .. automodule:: scitools.misc 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/modulecheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.modulecheck` 3 | =========================== 4 | 5 | .. automodule:: scitools.modulecheck 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/movie.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.movie` 3 | ============================= 4 | 5 | .. automodule:: scitools.easyviz.movie 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/multipleloop.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.multipleloop` 3 | ============================ 4 | 5 | .. automodule:: scitools.multipleloop 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/numpytools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpytools` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpytools 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/numpyutils.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpyutils` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpyutils 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/pprint2.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.pprint2` 3 | ======================= 4 | 5 | .. automodule:: scitools.pprint2 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/pyx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.pyx_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.pyx_ 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/redirect_io.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.redirect_io` 3 | =========================== 4 | 5 | .. automodule:: scitools.redirect_io 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/scitools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools` 3 | =============== 4 | 5 | .. automodule:: scitools 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/sound.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.sound` 3 | ===================== 4 | 5 | .. automodule:: scitools.sound 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | -------------------------------------------------------------------------------- /doc/api/html/html/_sources/std.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.std` 3 | =================== 4 | 5 | .. automodule:: scitools.std 6 | :members: 7 | :undoc-members: 8 | :show-inheritance: 9 | 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Master file automatically created by doconce sphinx_dir 3 | 4 | Easyviz Documentation 5 | ===================== 6 | 7 | Contents: 8 | 9 | .. toctree:: 10 | :maxdepth: 3 11 | 12 | tmp_easyviz 13 | 14 | 15 | Indices and tables 16 | ================== 17 | 18 | * :ref:`genindex` 19 | * :ref:`modindex` 20 | * :ref:`search` 21 | -------------------------------------------------------------------------------- /doc/easyviz/easyviz_sphinx_html/_static/ajax-loader.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hplgit/scitools/8df53a3a3bc95377f9fa85c04f3a329a0ec33e67/doc/easyviz/easyviz_sphinx_html/_static/ajax-loader.gif -------------------------------------------------------------------------------- /doc/easyviz/easyviz_sphinx_html/_static/comment-bright.png: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/hplgit/scitools/8df53a3a3bc95377f9fa85c04f3a329a0ec33e67/doc/man/man1/scitools.1.gz -------------------------------------------------------------------------------- /doc/src/api-sphinx/00README: -------------------------------------------------------------------------------- 1 | How to update sphinx documentation: 2 | 3 | this_dir=`pwd` 4 | # make easyviz doc with reST format: 5 | cd ../../../lib/scitools 6 | doconce insertdocstr rst . 7 | cd $this_dir 8 | 9 | make html 10 | rm ../sphinx/html/* 11 | cp -r _build/html/* ../sphinx-html/ 12 | 13 | # run easyviz doc with plain again (for pydoc): 14 | cd ../../../lib/scitools 15 | doconce insertdocstr plain . 16 | cd $this_dir 17 | 18 | ls _build/html 19 | 20 | The statements above are in the script update.sh. 21 | 22 | 23 | How to generate sphinx documentation: 24 | 25 | 1. For each module, generate a modulename.txt file: 26 | 27 | :mod:`modulename` 28 | ======================= 29 | 30 | .. automodule:: modulename 31 | :members: 32 | :undoc-members: 33 | :show-inheritance: 34 | 35 | 36 | 2. Clean up sphinx-genreated files: 37 | rm -rf _build/ _static/ _templates/ conf.py index.txt 38 | 39 | 3. Let sphinx generate new files: 40 | sphinx-quickstart 41 | 42 | Here are some typical answers: 43 | . 44 | n 45 | _ 46 | SciTools 47 | H. P. Langtangen, J. Ring, ++ 48 | 0.7 49 | 0.7 50 | .txt 51 | index 52 | n 53 | y 54 | n 55 | n 56 | n 57 | n 58 | y 59 | n 60 | n 61 | y 62 | y 63 | y 64 | 65 | (note that we use .txt files, include autodoc and pngmath) 66 | 67 | 4. Copy list of modules into the autogenerated index.txt file. 68 | 69 | 5. Edit conf.py to reflect where the scitools source is located: 70 | sys.path.append(os.path.join(os.path.abspath('.'), os.pardir, os.pardir, os.pardir, 'lib', 'scitools')) 71 | 72 | 5. Run 73 | make html 74 | 75 | 6. Load _build/html/index.html into a web browser to see the result 76 | 77 | ---- 78 | 79 | The steps above are automated by the generate.sh script. First one may 80 | run make_txt.py to generte new .txt files (this is necessary if there 81 | are new modules being added since last time). Then just run ./generate.sh 82 | to automatically run sphinx tools, edit files, and generate the 83 | documentation. 84 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/BoxField.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxField` 3 | ======================== 4 | 5 | .. automodule:: scitools.BoxField 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/BoxGrid.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.BoxGrid` 3 | ======================= 4 | 5 | .. automodule:: scitools.BoxGrid 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/EfficiencyTable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.EfficiencyTable` 3 | =============================== 4 | 5 | .. automodule:: scitools.EfficiencyTable 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/FloatComparison.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.FloatComparison` 3 | =============================== 4 | 5 | .. automodule:: scitools.FloatComparison 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/Lumpy.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Lumpy` 3 | ===================== 4 | 5 | .. automodule:: scitools.Lumpy 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/MovingPlotWindow.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.MovingPlotWindow` 3 | ================================ 4 | 5 | .. automodule:: scitools.MovingPlotWindow 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/NumPyDB.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.NumPyDB` 3 | ======================= 4 | 5 | .. automodule:: scitools.NumPyDB 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/PrmDictBase.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.PrmDictBase` 3 | =========================== 4 | 5 | .. automodule:: scitools.PrmDictBase 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/Regression.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.Regression` 3 | ========================== 4 | 5 | .. automodule:: scitools.Regression 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/StringFunction.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.StringFunction` 3 | ============================== 4 | 5 | .. automodule:: scitools.StringFunction 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/TkGUI.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.TkGUI` 3 | ===================== 4 | 5 | .. automodule:: scitools.TkGUI 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/aplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.aplotter` 3 | ======================== 4 | 5 | .. automodule:: scitools.aplotter 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/avplotter.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.avplotter` 3 | ========================= 4 | 5 | .. automodule:: scitools.avplotter 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/basics.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.basics` 3 | ====================== 4 | 5 | .. automodule:: scitools.basics 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/blt_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.blt_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.blt_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/clean.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | rm -rf _build *~ figs -------------------------------------------------------------------------------- /doc/src/api-sphinx/common.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.common` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.common 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/configdata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.configdata` 3 | ========================== 4 | 5 | .. automodule:: scitools.configdata 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/convergencerate.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.convergencerate` 3 | =============================== 4 | 5 | .. automodule:: scitools.convergencerate 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/debug.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.debug` 3 | ===================== 4 | 5 | .. automodule:: scitools.debug 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/dx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.dx_` 3 | =========================== 4 | 5 | .. automodule:: scitools.easyviz.dx_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/easyviz.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz` 3 | ======================= 4 | 5 | .. automodule:: scitools.easyviz 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/errorcheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.errorcheck` 3 | ========================== 4 | 5 | .. automodule:: scitools.errorcheck 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/filetable.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.filetable` 3 | ========================= 4 | 5 | .. automodule:: scitools.filetable 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/globaldata.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.globaldata` 3 | ========================== 4 | 5 | .. automodule:: scitools.globaldata 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/gnuplot_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.gnuplot_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.gnuplot_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/grace_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.grace_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.grace_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/index.txt: -------------------------------------------------------------------------------- 1 | 2 | SciTools Documentation 3 | ====================== 4 | 5 | Contents: 6 | 7 | .. toctree:: 8 | :maxdepth: 1 9 | 10 | scitools 11 | BoxField 12 | BoxGrid 13 | EfficiencyTable 14 | FloatComparison 15 | Lumpy 16 | NumPyDB 17 | PrmDictBase 18 | Regression 19 | StringFunction 20 | TkGUI 21 | avplotter 22 | aplotter 23 | basics 24 | configdata 25 | convergencerate 26 | debug 27 | errorcheck 28 | filetable 29 | globaldata 30 | misc 31 | modulecheck 32 | MovingPlotWindow 33 | multipleloop 34 | numpytools 35 | numpyutils 36 | pprint2 37 | redirect_io 38 | sound 39 | std 40 | easyviz 41 | blt_ 42 | common 43 | dx_ 44 | gnuplot_ 45 | grace_ 46 | matlab2_ 47 | matlab_ 48 | matplotlib_ 49 | misc 50 | movie 51 | pyx_ 52 | template_ 53 | utils 54 | veusz_ 55 | visit_ 56 | vtk_ 57 | vtk_new_ 58 | 59 | 60 | Indices and tables 61 | ================== 62 | 63 | * :ref:`genindex` 64 | * :ref:`modindex` 65 | * :ref:`search` 66 | 67 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/index.txt-orig: -------------------------------------------------------------------------------- 1 | 2 | SciTools Documentation 3 | ====================== 4 | 5 | Contents: 6 | 7 | .. toctree:: 8 | :maxdepth: 1 9 | 10 | scitools 11 | BoxField 12 | BoxGrid 13 | EfficiencyTable 14 | FloatComparison 15 | Lumpy 16 | NumPyDB 17 | PrmDictBase 18 | Regression 19 | StringFunction 20 | TkGUI 21 | avplotter 22 | aplotter 23 | basics 24 | configdata 25 | convergencerate 26 | debug 27 | errorcheck 28 | filetable 29 | globaldata 30 | misc 31 | modulecheck 32 | MovingPlotWindow 33 | multipleloop 34 | numpytools 35 | numpyutils 36 | pprint2 37 | redirect_io 38 | sound 39 | std 40 | easyviz 41 | blt_ 42 | common 43 | dx_ 44 | gnuplot_ 45 | grace_ 46 | matlab2_ 47 | matlab_ 48 | matplotlib_ 49 | misc 50 | movie 51 | pyx_ 52 | template_ 53 | utils 54 | veusz_ 55 | visit_ 56 | vtk_ 57 | vtk_new_ 58 | 59 | 60 | Indices and tables 61 | ================== 62 | 63 | * :ref:`genindex` 64 | * :ref:`modindex` 65 | * :ref:`search` 66 | 67 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/make_txt.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | """Grab all SciTools modules and make .txt files for sphinx.""" 3 | import os, glob 4 | 5 | scitools_dir = os.path.join(os.pardir, os.pardir, os.pardir, 'lib', 'scitools') 6 | easyviz_dir = os.path.join(scitools_dir, 'easyviz') 7 | this_dir = os.getcwd() 8 | os.chdir(scitools_dir) 9 | modules_scitools = glob.glob('*.py') 10 | os.chdir('easyviz') 11 | modules_easyviz = glob.glob('*.py') 12 | os.chdir(this_dir) 13 | # strip off .py and remove tmp* and __init__: 14 | modules_scitools = ['scitools.' + m[:-3] for m in modules_scitools \ 15 | if not m.startswith('tmp') and m != '__init__.py' \ 16 | and m[-5:] != '.p.py' and not m.startswith('_')] 17 | modules_easyviz = ['scitools.easyviz.' + m[:-3] for m in modules_easyviz \ 18 | if not m.startswith('tmp') and m != '__init__.py' \ 19 | and m[-5:] != '.p.py' and not m.startswith('_')] 20 | modules_scitools.sort() 21 | modules_easyviz.sort() 22 | modules_scitools.insert(0, 'scitools') 23 | modules_easyviz.insert(0, 'easyviz') 24 | modules = modules_scitools + modules_easyviz 25 | 26 | for m in modules: 27 | f = open(m.split('.')[-1] + '.txt', 'w') 28 | f.write(""" 29 | :mod:`%s` 30 | =========================================================== 31 | 32 | .. automodule:: %s 33 | :members: 34 | :undoc-members: 35 | :show-inheritance: 36 | """ % (m, m)) 37 | f.close() 38 | 39 | print 'List of modules for generate.sh:' 40 | print r"""scitools subst ':maxdepth: 2' ":maxdepth: 2\n\n""", 41 | for m in modules: 42 | print ' ' + m.split('.')[-1] + r'\n', 43 | print '" index.txt' 44 | 45 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/matlab2_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab2_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.matlab2_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/matlab_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matlab_` 3 | =============================== 4 | 5 | .. automodule:: scitools.easyviz.matlab_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/matplotlib_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.matplotlib_` 3 | =================================== 4 | 5 | .. automodule:: scitools.easyviz.matplotlib_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/misc.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.misc` 3 | ==================== 4 | 5 | .. automodule:: scitools.misc 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/modulecheck.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.modulecheck` 3 | =========================== 4 | 5 | .. automodule:: scitools.modulecheck 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/movie.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.movie` 3 | ============================= 4 | 5 | .. automodule:: scitools.easyviz.movie 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/multipleloop.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.multipleloop` 3 | ============================ 4 | 5 | .. automodule:: scitools.multipleloop 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/numpytools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpytools` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpytools 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/numpyutils.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.numpyutils` 3 | ========================== 4 | 5 | .. automodule:: scitools.numpyutils 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/pprint2.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.pprint2` 3 | ======================= 4 | 5 | .. automodule:: scitools.pprint2 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/pyx_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.pyx_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.pyx_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/redirect_io.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.redirect_io` 3 | =========================== 4 | 5 | .. automodule:: scitools.redirect_io 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/scitools.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools` 3 | =============== 4 | 5 | .. automodule:: scitools 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/scitools_logo.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hplgit/scitools/8df53a3a3bc95377f9fa85c04f3a329a0ec33e67/doc/src/api-sphinx/scitools_logo.jpg -------------------------------------------------------------------------------- /doc/src/api-sphinx/sound.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.sound` 3 | ===================== 4 | 5 | .. automodule:: scitools.sound 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/std.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.std` 3 | =================== 4 | 5 | .. automodule:: scitools.std 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/template_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.template_` 3 | ================================= 4 | 5 | .. automodule:: scitools.easyviz.template_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/update.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash -x 2 | this_dir=`pwd` 3 | # make easyviz doc with reST format: 4 | cd ../../../lib/scitools 5 | doconce insertdocstr rst . 6 | cd $this_dir 7 | 8 | make html 9 | rm ../sphinx/html/* 10 | cp -r _build/html/* ../sphinx-html/ 11 | 12 | # run easyviz doc with plain again (for pydoc): 13 | cd ../../../lib/scitools 14 | doconce insertdocstr plain . 15 | cd $this_dir 16 | 17 | ls _build/html 18 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/utils.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.utils` 3 | ============================= 4 | 5 | .. automodule:: scitools.easyviz.utils 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/veusz_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.veusz_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.veusz_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/visit_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.visit_` 3 | ============================== 4 | 5 | .. automodule:: scitools.easyviz.visit_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/vtk_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.vtk_` 3 | ============================ 4 | 5 | .. automodule:: scitools.easyviz.vtk_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/api-sphinx/vtk_new_.txt: -------------------------------------------------------------------------------- 1 | 2 | :mod:`scitools.easyviz.vtk_new_` 3 | ================================ 4 | 5 | .. automodule:: scitools.easyviz.vtk_new_ 6 | :members: 7 | :undoc-members: 8 | :special-members: 9 | :inherited-members: 10 | :show-inheritance: 11 | -------------------------------------------------------------------------------- /doc/src/clean.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | rm -rf api-sphinx/_build easyviz/tmp_* easyviz/*~ easyviz/sphinx-rootdir -------------------------------------------------------------------------------- /doc/src/easyviz/clean.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | rm -rf *~ tmp* *.dst.txt sphinx-rootdir *.tex *.rst *.gwiki *.log *.aux *.dvi *.out 3 | 4 | -------------------------------------------------------------------------------- /doc/src/easyviz/easyviz_bars.do.txt: -------------------------------------------------------------------------------- 1 | ===== Bar Charts ===== 2 | 3 | Easyviz also supports a unified interface to simple bar charts. 4 | Here is a simple example for displaying tabular values, with one 5 | bar for each data point: 6 | !bc pycod 7 | from scitools.std import * 8 | languages = ['C', 'Java', 'C++', 'PHP', 'VB', 'C#', 'Python', 9 | 'Perl', 'JavaScript'] 10 | ratings = [18, 18, 9.7, 9.7, 6.4, 4.4, 4.2, 3.6, 2.5] 11 | bar(ratings, 'r', 12 | barticks=languages, 13 | ylabel='Ratings in percent (TIOBE Index, April 2010)', 14 | axis=[-1, len(languages), 0, 20], 15 | hardcopy='tmp.eps') 16 | !ec 17 | The bar chart illustrates the data in the `ratings` list. These data 18 | correspond to the names in `languages`. 19 | 20 | FIGURE:[figs/pyranking] A simple bar chart illustrating the popularity of common programming languages. 21 | 22 | One may display groups of bars. The data can then be put in a matrix, 23 | where rows (1st index) correspond to the groups the columns to the 24 | data within one group: 25 | !bc pycod 26 | data = [[ 0.15416284 0.7400497 0.26331502] 27 | [ 0.53373939 0.01457496 0.91874701] 28 | [ 0.90071485 0.03342143 0.95694934] 29 | [ 0.13720932 0.28382835 0.60608318]] 30 | bar(data, 31 | barticks=['group 1', 'group 2', 'group 3', 'group 4'], 32 | legend=['bar 1', 'bar 2', 'bar 3'], 33 | axis=[-1, data.shape[0], 0, 1.3], 34 | ylabel='Normalized CPU time', 35 | title='Bars from a matrix, now with more annotations') 36 | !ec 37 | When the names of the groups (barticks) are quite long, rotating them 38 | 90 degrees is preferable, and this is done by the keyword 39 | argument `rotated_barticks=True`. 40 | 41 | The demo program in `examples/bar_demo.py` contains additional examples 42 | and features. 43 | -------------------------------------------------------------------------------- /doc/src/easyviz/figs/contour3_ex1.png: 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Easyviz Documentation documentation master file, created by 2 | sphinx-quickstart on Fri Jul 30 10:50:17 2010. 3 | You can adapt this file completely to your liking, but it should at least 4 | contain the root `toctree` directive. 5 | 6 | Welcome to Easyviz Documentation! 7 | ================================= 8 | 9 | Contents: 10 | 11 | .. toctree:: 12 | :maxdepth: 2 13 | 14 | tmp_easyviz 15 | 16 | 17 | Indices and tables 18 | ================== 19 | 20 | * :ref:`genindex` 21 | * :ref:`modindex` 22 | * :ref:`search` 23 | 24 | -------------------------------------------------------------------------------- /doc/src/easyviz/make.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash -x 2 | # Create Easyviz documentation. 3 | # clean: 4 | rm -rf tmp_* 5 | 6 | # Make .p.py -> .py files and make sure most recent documentation of 7 | # Easyviz is in the __init__.py file: 8 | 9 | # Prepare Doconce files and filter them to various formats: 10 | cp easyviz.do.txt tmp_easyviz.do.txt 11 | 12 | doconce format html tmp_easyviz.do.txt 13 | doconce format plain tmp_easyviz.do.txt 14 | 15 | doconce format latex tmp_easyviz.do.txt --latex_code_style=pyg 16 | scitools subst slice_ 'slice\_' tmp_easyviz.tex # _ fix 17 | latex -shell-escape tmp_easyviz 18 | latex -shell-escape tmp_easyviz 19 | dvipdf tmp_easyviz.dvi 20 | 21 | # note: Unknown target name "slice" will always be reported by rst 22 | # conversion because we write slice_ in the list of Matlab-like commands... 23 | 24 | #doconce format gwiki tmp_easyviz.do.txt 25 | #doconce gwiki_figsubst tmp_easyviz.gwiki https://scitools.googlecode.com/hg/doc/easyviz 26 | 27 | doconce format sphinx tmp_easyviz.do.txt 28 | doconce sphinx_dir tmp_easyviz 29 | python automake_sphinx.py 30 | 31 | #doconce format rst tmp_easyviz.do.txt 32 | #scitools subst '(figs/.+?)\.eps' '\g<1>.png' tmp_easyviz.rst 33 | #rst2html.py tmp_easyviz.rst > tmp_easyviz_rst.html 34 | 35 | cp tmp_easyviz.pdf ../../easyviz/easyviz.pdf 36 | cp tmp_easyviz.html ../../easyviz/easyviz.html 37 | #cp tmp_easyviz_rst.html ../../easyviz/easyviz_rst.html 38 | #cp tmp_easyviz.gwiki ../../easyviz/easyviz.gwiki 39 | #cp tmp_easyviz.txt ../../easyviz/easyviz.txt 40 | preprocess tmp_easyviz.do.txt > tmp.do.txt 41 | cp tmp.do.txt ../../easyviz/easyviz.do.txt 42 | #cp tmp_easyviz_sphinx.pdf ../../easyviz/easyviz_sphinx.pdf 43 | # must remove old dirs, otherwise new files won't overwrite 44 | rm -rf ../../easyviz/easyviz_sphinx_html 45 | rm -rf ../../easyviz/figs 46 | rm -rf ../../easyviz/easyviz_sphinx_html/figs 47 | cp -r sphinx-rootdir/_build/html ../../easyviz/easyviz_sphinx_html 48 | cp -r figs ../../easyviz/figs # to make HTML work 49 | #cp -r figs ../../easyviz/easyviz_sphinx_html/figs # to make Sphinx work 50 | rm -f ../../easyviz/figs/*.*ps # save some diskspace 51 | #cp tmp_easyviz.gwiki ../../../../scitools.wiki/EasyvizDocumentation.wiki 52 | 53 | ls ../../easyviz/ 54 | 55 | 56 | 57 | 58 | 59 | -------------------------------------------------------------------------------- /doc/web/index.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | SciTools 12 | 13 | 14 | 15 | 16 | 17 |
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19 | View on GitHub 20 | 21 |

SciTools

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Additional scientific computing functionality in Python - extensions to NumPy/SciPy++

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25 | Download this project as a .zip file 26 | Download this project as a tar.gz file 27 |
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35 | SciTools documentation

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42 | 43 | 44 | 50 | 51 | 52 | 53 | 54 | 55 | -------------------------------------------------------------------------------- /doc/web/javascripts/main.js: -------------------------------------------------------------------------------- 1 | console.log('This would be the main JS file.'); 2 | -------------------------------------------------------------------------------- /doc/web/params.json: -------------------------------------------------------------------------------- 1 | {"name":"Scitools","tagline":"Automatically exported from code.google.com/p/scitools","body":"# SciTools documentation","google":"","note":"Don't delete this file! It's used internally to help with page regeneration."} -------------------------------------------------------------------------------- /examples/axes_demo.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | """Demonstration on how to place arbitrary axes in the different backends.""" 4 | 5 | from scitools.std import * 6 | 7 | x = linspace(0,1,51) 8 | y1 = sin(2*pi*x) 9 | y2 = cos(4*pi*x) 10 | 11 | plot(x, y1, 'rd-', xlabel='x-axis', ylabel='y-axis', legend='test') 12 | 13 | if backend == 'veusz': 14 | pos = [.64, .55, .1, .2] # [leftMargin,bottomMargin,rightMargin,topMargin] 15 | elif backend == 'gnuplot': 16 | pos = [.6, .52, .33, .33] # [left,bottom,width,height] 17 | elif backend == 'grace': 18 | pos = [.6, .5, .8, .75] # [xmin,ymin,xmax,ymax] 19 | elif backend == 'matplotlib': 20 | pos = [.62, .56, .2, .2] # [left,bottom,width,height] 21 | elif backend == 'matlab': 22 | pos = [.62, .56, .2, .2] # [left,bottom,width,height] 23 | elif backend == 'matlab2': 24 | pos = [.62, .56, .2, .2] # [left,bottom,width,height] 25 | elif backend == 'pyx': 26 | # default figure size (i.e., [width,height]) is [15,9.27]. 27 | pos = [9.6, 3.5, 4, 4] # [xpos,ypos,width,height] 28 | else: 29 | print "The '%s' backend has currently no support for placement of " \ 30 | "arbitrary axes." % backend 31 | pos = None 32 | 33 | if pos is not None: 34 | ax = axes(viewport=pos) # create a new axis at the given position 35 | plot(ax, x, y2, 'b--') # draw a curve in the new axis 36 | 37 | savefig('tmp_axes1a.eps') 38 | if not backend == 'pyx': 39 | savefig('tmp_axes1a.png') 40 | 41 | if backend == 'matlab2': 42 | save('tmp_test_axes.m') 43 | elif backend == 'veusz': 44 | save('tmp_test_axes.vsz') 45 | 46 | raw_input('Press Return key to quit:') 47 | -------------------------------------------------------------------------------- /examples/bar_demo.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from scitools.std import * 4 | from numpy.random import rand, seed 5 | seed(12) # fix to ensure same results each time this program is run 6 | 7 | # simple example: 8 | data = rand(4,3) 9 | print data 10 | bar(data) 11 | title('Bars from a matrix: 4 groups of 3 bars each') 12 | # alternative: 13 | figure() 14 | bar(data, 15 | barticks=['group 1', 'group 2', 'group 3', 'group 4'], 16 | legend=['bar 1', 'bar 2', 'bar 3'], 17 | axis=[-1, data.shape[0], 0, 1.3], 18 | ylabel='Normalized CPU time', 19 | title='Bars from a matrix, now with more annotations') 20 | 21 | 22 | # example with a vector: 23 | figure() 24 | x = linspace(-3,3,15) 25 | y = exp(-x**2) 26 | if backend in ['gnuplot', 'matplotlib']: 27 | w = 7 # increase width of bars 28 | else: 29 | w = 0.8 # default 30 | bar(y, width=w) 31 | title('Bars at 15 points for the exp(-x**2) functions') 32 | 33 | # draw a bar graph from a dicitonary: 34 | figure() 35 | data = {'method1': {'thing1': 3, 'thing2': 2, 'thing3': 4}, 36 | 'method2': {'thing1': 4, 'thing2': 4.5, 'thing3': 2}, 37 | 'method3': {'thing1': 1, 'thing2': 4, 'thing3': 2},} 38 | bar(data, 39 | rotated_barticks=True, 40 | savefig='tmp_bar1a.eps', color=True, 41 | ylabel='response', 42 | axis=[-1, len(data), 0, 5], 43 | title='Bars from nested dictionary') 44 | 45 | # red bars with borders turned off: 46 | figure() 47 | bar(rand(5,4), 'r', shading='interp', 48 | title='Red bars with borders turned off') 49 | 50 | # specify face and edge color: 51 | figure() 52 | bar(rand(3,3), facecolor='b', edgecolor='r', 53 | title='Bars with specified face and edge colors') 54 | 55 | raw_input('Press Return key to quit: ') 56 | -------------------------------------------------------------------------------- /examples/clean.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | rm -f *~ tmp* movie.gif movie.avi movie.mpeg -------------------------------------------------------------------------------- /examples/compatibility_checks.py: -------------------------------------------------------------------------------- 1 | from numpy import linspace 2 | from scitools.errorcheck import * 3 | q1 = linspace(0, 1, 5) 4 | try: 5 | right_length(q1, 2) 6 | except Exception, e: 7 | print e.__class__.__name__, e 8 | try: 9 | right_size1(q1, (2,2)) 10 | except Exception, e: 11 | print e.__class__.__name__, e 12 | try: 13 | q2 = linspace(0, 1, 6) 14 | except Exception, e: 15 | print e.__class__.__name__, e 16 | try: 17 | right_size2(q1, q2) 18 | except Exception, e: 19 | print e.__class__.__name__, e 20 | try: 21 | right_type(q2, list) 22 | except Exception, e: 23 | print e.__class__.__name__, e 24 | try: 25 | wrong_type(q1) 26 | except Exception, e: 27 | print e.__class__.__name__, e 28 | 29 | """ 30 | ValueError file "compatibility_checks.py", line 5, main program 31 | q1 has length 5, which is not compatible with assumed length 2 32 | ValueError file "compatibility_checks.py", line 9, main program 33 | q1 has size (5,), which is not compatible with assumed size (2, 2) 34 | ValueError file "compatibility_checks.py", line 17, main program 35 | q1 has size (5,), which is not compatible with size (6,) of q2 36 | TypeError file "compatibility_checks.py", line 21, main program 37 | q2 is of type ndarray, while we expected 38 | TypeError q1 is of wrong type (ndarray). 39 | """ 40 | -------------------------------------------------------------------------------- /examples/contour_demo.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | from scitools.std import * 4 | 5 | # A simple contour plot of the peaks function (standard test function): 6 | contour(peaks()) 7 | 8 | figure() 9 | # Here we draw 15 red contour lines with double line width: 10 | xv, yv = ndgrid(linspace(-3, 3, 51), linspace(-3, 3, 51)) 11 | values = xv*exp(-xv**2 - yv**2) 12 | contour(xv, yv, values, 15, 'r', linewidth=2) 13 | 14 | figure() 15 | # Draw contour lines with labels at -2, 0, 2, and 5: 16 | values = peaks(xv, yv) 17 | contour(xv, yv, values, [-2,0,2,5]) 18 | 19 | figure() 20 | # Here we combine a contour plot with a quiver plot 21 | # (note: currently not working with the Gnuplot backend): 22 | x = y = linspace(-2, 2, 21) 23 | xv, yv = ndgrid(x, y) # or meshgrid(x, y, indexing='ij') 24 | values = sin(xv)*sin(yv)*exp(-xv**2 - xv**2) 25 | dx, dy = gradient(values) 26 | contour(xv, yv, values, 10, show=False) 27 | hold('on') 28 | quiver(xv, yv, dx, dy, 2, show=True) 29 | hold('off') 30 | 31 | figure() 32 | # Another example with contour labels: 33 | x = linspace(-2,2,201) 34 | y = linspace(-1,1,51) 35 | xv, yv = ndgrid(x,y) 36 | values = sin(3*yv - xv**2 + 1) + cos(2*yv**2 - 2*xv) 37 | contour(xv, yv, values, clabels='on') # contour(x,y,values,..) also works 38 | 39 | figure() 40 | # The contourf command draws filled contours: 41 | values = peaks(201) 42 | contourf(values, 10, caxis=[-20, 20], title='Filled Contour Plot') 43 | 44 | raw_input('Press Return key to quit: ') 45 | -------------------------------------------------------------------------------- /examples/contourslice_demo1.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | # Example taken from: 4 | # http://www.mathworks.com/access/helpdesk/help/techdoc/ref/contourslice.html 5 | 6 | from scitools.easyviz import * 7 | from time import sleep 8 | 9 | setp(show=False) 10 | x, y, z, v = flow() 11 | h = contourslice(x,y,z,v,seq(1,9),[],[0],linspace(-8,2,10)) 12 | axis([0,10,-3,3,-3,3]) 13 | daspect([1,1,1]) 14 | camva(24) 15 | camproj('perspective') 16 | campos([-3,-15,5]) 17 | ax = gca() 18 | ax.setp(fgcolor=(1,1,1), bgcolor=(0,0,0)) 19 | box('on') 20 | view(3) # because camva, camproj, and campos currently not working 21 | setp(show=True) 22 | show() 23 | 24 | #savefig('tmp_contourslice1a.eps') 25 | #savefig('tmp_contourslice1a.png') 26 | 27 | figure() 28 | # alternative syntax: 29 | h = contourslice(x,y,z,v,seq(1,9),[],[0],linspace(-8,2,10), 30 | axis=[0,10,-3,3,-3,3], daspect=[1,1,1], 31 | camva=24, camproj='perspective', campos=[-3,-15,5], 32 | fgcolor=(1,1,1), bgcolor=(0,0,0), 33 | box='on') 34 | 35 | #savefig('tmp_contourslice1b.eps') 36 | #savefig('tmp_contourslice1b.png') 37 | 38 | #sleep(3) 39 | raw_input('Press Return key to quit: ') 40 | -------------------------------------------------------------------------------- /examples/contourslice_demo2.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | # Example taken from: 4 | # http://www.mathworks.com/access/helpdesk/help/techdoc/visualize/f5-3371.html 5 | 6 | from scitools.easyviz import * 7 | from time import sleep 8 | from scipy import io 9 | 10 | setp(interactive=False) 11 | 12 | mri = io.loadmat('mri_matlab_v6.mat') 13 | D = mri['D'] 14 | D = squeeze(D) 15 | 16 | image_num = 8 17 | 18 | x = xlim; 19 | y = ylim; 20 | 21 | # Displaying a 2-D Contour Slice: 22 | contourslice(D,[],[],image_num,indexing='xy') 23 | axis('ij') 24 | xlim(x) 25 | ylim(y) 26 | daspect([1,1,1]) 27 | colormap('default') 28 | show() 29 | 30 | #savefig('tmp_contourslice2a.eps') 31 | #savefig('tmp_contourslice2a.png') 32 | 33 | figure() 34 | BUG = 1 35 | phandles = contourslice(D,[],[],[1,12,19,27-BUG],8,indexing='xy') 36 | view(3) 37 | axis('tight') 38 | #set(phandles,'LineWidth',2) 39 | setp(phandles, linewidth=4) 40 | show() 41 | #sleep(3) 42 | raw_input('Press Return key to quit: ') 43 | 44 | ## savefig('tmp_contourslice2b.eps') 45 | ## savefig('tmp_contourslice2b.png') 46 | -------------------------------------------------------------------------------- /examples/demo_pyreport.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | scitools pyreport -l -e -t pdf -o report_mpl -a '0.05 9' demo_pyreport.py 3 | scitools pyreport -l -e -t html -o report_mpl -a '0.05 9' demo_pyreport.py 4 | scitools pyreport -l -e -t pdf -o report_evz -a '0.05 9 easyviz' demo_pyreport.py 5 | scitools pyreport -l -e -t html -o report_evz -a '0.05 9 easyviz' demo_pyreport.py 6 | -------------------------------------------------------------------------------- /examples/fill_demo.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | 3 | """Examples taken from fill_demo.py and fill_demo2.py in Matplotlib.""" 4 | 5 | from scitools.std import * 6 | 7 | t = linspace(0.0, 1.0, 101) 8 | s = sin(2*2*pi*t) 9 | 10 | fill(t, s*exp(-5*t), 'r', grid=True) 11 | 12 | figure() 13 | t = linspace(0.0,3.0,301) 14 | s = sin(2*pi*t) 15 | c = sin(4*pi*t) 16 | fill(t, s, 'b', t, c, 'g', opacity=0.2) 17 | 18 | raw_input('Press Return key to quit: ') 19 | 20 | legend('domain1', 'domain2') 21 | clf() 22 | 23 | plot(t,s,legend='a') 24 | plot(t,s+2,legend='b') 25 | -------------------------------------------------------------------------------- /examples/grab_backend_matplotlib_ex1.py: -------------------------------------------------------------------------------- 1 | #!/usr/bin/env python 2 | """Configure a plot by grabbing the matplotlib backend 3 | 4 | This example demonstrates the use of setp and getp, which is a 5 | typical matlab/pyplot way to set properties of objects 6 | 7 | setp(handler, 'something', value) or getp(handler [, 'something']) 8 | will call set_something or get_something from handler 9 | 10 | getp with only the handler argument will show full property list 11 | """ 12 | __author__ = 'Rolv Erlend Bredesen