├── .github ├── config.yml ├── dependabot.yml ├── stale.yml └── workflows │ └── build.yml ├── .gitignore ├── .nojekyll ├── .pre-commit-config.yaml ├── CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE.md ├── README.md ├── _static └── hsf.css ├── _templates └── layout.html ├── advanced-python ├── 10Basics.ipynb ├── 11AdvancedPython.ipynb ├── 12AdvancedClasses.ipynb ├── 20DataAndPlotting.ipynb ├── 30Classification.ipynb ├── 31ClassificationExtension.ipynb ├── 32BoostingToUniformity.ipynb ├── 33ModelTuning.ipynbBKP ├── 40Histograms.ipynb ├── 45DemoReweighting.ipynb ├── 50LikelihoodInference.ipynb ├── 60sPlot.ipynb ├── 70ScikitHEPUniverse.ipynb └── README.md ├── codespell.txt ├── conf.py ├── environment.yml ├── git ├── .gitkeep ├── 01-basics.md ├── 02-setup.md ├── 03-create.md ├── 04-changes.md ├── 05-history.md ├── 06-ignore.md ├── 07-gitlab.md ├── 08-share.md ├── 09-pullrequests.md ├── 10-conflict.md ├── 11-ci.md ├── 12-open.md ├── 13-licensing.md ├── 14-citation.md ├── README.md ├── fig │ ├── .gitkeep │ ├── conflict.svg │ ├── git-checkout.svg │ ├── git-committing.svg │ ├── git-freshly-made-github-repo.svg │ ├── git-freshly-made-gitlab-repo.png │ ├── git-staging-area.svg │ ├── git_staging.svg │ ├── github-add-collaborators.png │ ├── github-change-repo-string.png │ ├── github-collaboration.svg │ ├── github-create-repo-01.png │ ├── github-create-repo-02.png │ ├── github-create-repo-03.png │ ├── github-find-repo-string.png │ ├── github-repo-after-first-push.svg │ ├── gitlab-add-collaborators.png │ ├── gitlab-ci-artefacts.png │ ├── gitlab-ci-first-log.png │ ├── gitlab-ci-pipeline-link.png │ ├── gitlab-ci-view-log.png │ ├── gitlab-ci-view-pipeline.png │ ├── gitlab-create-repo-01.png │ ├── gitlab-create-repo-02.png │ ├── gitlab-create-repo-03.png │ ├── gitlab-find-repo-string.png │ ├── gitlab-pr-close.png │ ├── gitlab-pr-commits.png │ ├── gitlab-pr-diff.png │ ├── gitlab-pr-discussion.png │ ├── gitlab-pr-fork.png │ ├── gitlab-pr-merge.png │ ├── gitlab-pr-newmergerequest.png │ ├── gitlab-pr-selectbranch.png │ ├── gitlab-pr-title.png │ ├── gitlab-pr-wheretofork.png │ ├── merge.svg │ ├── phd101212s.png │ ├── play-changes.svg │ └── versions.svg └── files │ ├── make_plot.py │ └── my_document.tex ├── hsf_logo_angled.png ├── index.md ├── python ├── 00scripts.md ├── 01basics.ipynb ├── README.md ├── classes.ipynb ├── conditions.ipynb ├── dictionaries.ipynb ├── figs │ ├── B_flight_distance.png │ ├── B_flight_distance_v2.png │ ├── B_flight_distance_v3.png │ ├── B_flight_distance_with_cut_compare.png │ ├── python_references1.jpg │ ├── python_references2.jpg │ └── python_references3.jpg ├── first_histogram.md ├── further_reading.md ├── learning.md ├── lists.ipynb ├── methods.ipynb ├── modules.ipynb ├── numbers.ipynb ├── operators.md ├── running.md ├── scripting.md └── strings.ipynb ├── shell-extras ├── Material │ ├── Poems │ │ ├── Byron.txt │ │ ├── Keats.txt │ │ ├── Shakespeare.txt │ │ └── Shakespeare2.txt │ ├── Recipes │ │ ├── Cheesecake.txt │ │ ├── Fondue.txt │ │ └── Pizza.txt │ └── StarWars │ │ ├── EpisodeI.txt │ │ └── Quotes.txt ├── README.md ├── persistent-screen.md ├── screen.md ├── screen2.md └── shell2.md ├── shell ├── 02-filedir.md ├── 03-create.md ├── 04-pipefilter.md ├── 05-loop.md ├── 06-script.md ├── 07-find.md ├── README.md ├── data-shell │ ├── Desktop │ │ └── .gitkeep │ ├── creatures │ │ ├── basilisk.dat │ │ └── unicorn.dat │ ├── data │ │ ├── amino-acids.txt │ │ ├── animal-counts │ │ │ └── animals.txt │ │ ├── animals.txt │ │ ├── elements │ │ │ ├── Ac.xml │ │ │ ├── Ag.xml │ │ │ ├── Al.xml │ │ │ ├── Am.xml │ │ │ ├── Ar.xml │ │ │ ├── As.xml │ │ │ ├── At.xml │ │ │ ├── Au.xml │ │ │ ├── B.xml │ │ │ ├── Ba.xml │ │ │ ├── Be.xml │ │ │ ├── Bi.xml │ │ │ ├── Bk.xml │ │ │ ├── Br.xml │ │ │ ├── C.xml │ │ │ ├── Ca.xml │ │ │ ├── Cd.xml │ │ │ ├── Ce.xml │ │ │ ├── Cf.xml │ │ │ ├── Cl.xml │ │ │ ├── Cm.xml │ │ │ ├── Co.xml │ │ │ ├── Cr.xml │ │ │ ├── Cs.xml │ │ │ ├── Cu.xml │ │ │ ├── Dy.xml │ │ │ ├── Er.xml │ │ │ ├── Es.xml │ │ │ ├── Eu.xml │ │ │ ├── F.xml │ │ │ ├── Fe.xml │ │ │ ├── Fm.xml │ │ │ ├── Fr.xml │ │ │ ├── Ga.xml │ │ │ ├── Gd.xml │ │ │ ├── Ge.xml │ │ │ ├── H.xml │ │ │ ├── He.xml │ │ │ ├── Hf.xml │ │ │ ├── Hg.xml │ │ │ ├── Ho.xml │ │ │ ├── I.xml │ │ │ ├── In.xml │ │ │ ├── Ir.xml │ │ │ ├── K.xml │ │ │ ├── Kr.xml │ │ │ ├── La.xml │ │ │ ├── Li.xml │ │ │ ├── Lr.xml │ │ │ ├── Lu.xml │ │ │ ├── Md.xml │ │ │ ├── Mg.xml │ │ │ ├── Mn.xml │ │ │ ├── Mo.xml │ │ │ ├── N.xml │ │ │ ├── Na.xml │ │ │ ├── Nb.xml │ │ │ ├── Nd.xml │ │ │ ├── Ne.xml │ │ │ ├── Ni.xml │ │ │ ├── No.xml │ │ │ ├── Np.xml │ │ │ ├── O.xml │ │ │ ├── Os.xml │ │ │ ├── P.xml │ │ │ ├── Pa.xml │ │ │ ├── Pb.xml │ │ │ ├── Pd.xml │ │ │ ├── Pm.xml │ │ │ ├── Po.xml │ │ │ ├── Pr.xml │ │ │ ├── Pt.xml │ │ │ ├── Pu.xml │ │ │ ├── Ra.xml │ │ │ ├── Rb.xml │ │ │ ├── Re.xml │ │ │ ├── Rh.xml │ │ │ ├── Rn.xml │ │ │ ├── Ru.xml │ │ │ ├── S.xml │ │ │ ├── Sb.xml │ │ │ ├── Sc.xml │ │ │ ├── Se.xml │ │ │ ├── Si.xml │ │ │ ├── Sm.xml │ │ │ ├── Sn.xml │ │ │ ├── Sr.xml │ │ │ ├── Ta.xml │ │ │ ├── Tb.xml │ │ │ ├── Tc.xml │ │ │ ├── Te.xml │ │ │ ├── Th.xml │ │ │ ├── Ti.xml │ │ │ ├── Tl.xml │ │ │ ├── Tm.xml │ │ │ ├── U.xml │ │ │ ├── V.xml │ │ │ ├── W.xml │ │ │ ├── Xe.xml │ │ │ ├── Y.xml │ │ │ ├── Yb.xml │ │ │ ├── Zn.xml │ │ │ └── Zr.xml │ │ ├── morse.txt │ │ ├── pdb │ │ │ ├── aldrin.pdb │ │ │ ├── ammonia.pdb │ │ │ ├── ascorbic-acid.pdb │ │ │ ├── benzaldehyde.pdb │ │ │ ├── camphene.pdb │ │ │ ├── cholesterol.pdb │ │ │ ├── cinnamaldehyde.pdb │ │ │ ├── citronellal.pdb │ │ │ ├── codeine.pdb │ │ │ ├── cubane.pdb │ │ │ ├── cyclobutane.pdb │ │ │ ├── cyclohexanol.pdb │ │ │ ├── cyclopropane.pdb │ │ │ ├── ethane.pdb │ │ │ ├── ethanol.pdb │ │ │ ├── ethylcyclohexane.pdb │ │ │ ├── glycol.pdb │ │ │ ├── heme.pdb │ │ │ ├── lactic-acid.pdb │ │ │ ├── lactose.pdb │ │ │ ├── lanoxin.pdb │ │ │ ├── lsd.pdb │ │ │ ├── maltose.pdb │ │ │ ├── menthol.pdb │ │ │ ├── methane.pdb │ │ │ ├── methanol.pdb │ │ │ ├── mint.pdb │ │ │ ├── morphine.pdb │ │ │ ├── mustard.pdb │ │ │ ├── nerol.pdb │ │ │ ├── norethindrone.pdb │ │ │ ├── octane.pdb │ │ │ ├── pentane.pdb │ │ │ ├── piperine.pdb │ │ │ ├── propane.pdb │ │ │ ├── pyridoxal.pdb │ │ │ ├── quinine.pdb │ │ │ ├── strychnine.pdb │ │ │ ├── styrene.pdb │ │ │ ├── sucrose.pdb │ │ │ ├── testosterone.pdb │ │ │ ├── thiamine.pdb │ │ │ ├── tnt.pdb │ │ │ ├── tuberin.pdb │ │ │ ├── tyrian-purple.pdb │ │ │ ├── vanillin.pdb │ │ │ ├── vinyl-chloride.pdb │ │ │ └── vitamin-a.pdb │ │ ├── planets.txt │ │ ├── salmon.txt │ │ └── sunspot.txt │ ├── molecules │ │ ├── cubane.pdb │ │ ├── ethane.pdb │ │ ├── methane.pdb │ │ ├── octane.pdb │ │ ├── pentane.pdb │ │ └── propane.pdb │ ├── north-pacific-gyre │ │ └── 2012-07-03 │ │ │ ├── NENE01729A.txt │ │ │ ├── NENE01729B.txt │ │ │ ├── NENE01736A.txt │ │ │ ├── NENE01751A.txt │ │ │ ├── NENE01751B.txt │ │ │ ├── NENE01812A.txt │ │ │ ├── NENE01843A.txt │ │ │ ├── NENE01843B.txt │ │ │ ├── NENE01971Z.txt │ │ │ ├── NENE01978A.txt │ │ │ ├── NENE01978B.txt │ │ │ ├── NENE02018B.txt │ │ │ ├── NENE02040A.txt │ │ │ ├── NENE02040B.txt │ │ │ ├── NENE02040Z.txt │ │ │ ├── NENE02043A.txt │ │ │ ├── NENE02043B.txt │ │ │ ├── goodiff │ │ │ └── goostats │ ├── notes.txt │ ├── pizza.cfg │ ├── solar.pdf │ └── writing │ │ ├── data │ │ ├── LittleWomen.txt │ │ ├── one.txt │ │ └── two.txt │ │ ├── haiku.txt │ │ ├── old │ │ └── .gitkeep │ │ ├── thesis │ │ └── empty-draft.md │ │ └── tools │ │ ├── format │ │ ├── old │ │ └── oldtool │ │ └── stats ├── fig │ ├── cern_change_shell.png │ ├── filesystem-challenge.odg │ ├── filesystem-challenge.svg │ ├── filesystem.svg │ ├── find-file-tree.odg │ ├── find-file-tree.svg │ ├── home-directories.svg │ ├── homedir.odg │ ├── nano-screenshot.png │ ├── redirects-and-pipes.png │ ├── redirects-and-pipes.svg │ ├── shell_script_for_loop_flow_chart.svg │ └── standard-filesystem-hierarchy.svg └── files │ └── .gitkeep └── snakemake ├── README.md ├── code ├── advanced_tutorial.tar ├── advanced_tutorial │ ├── Snakefile │ ├── cfg.yaml │ ├── get.snake │ ├── get_info.py │ ├── input.tar │ ├── input │ │ ├── address.txt │ │ └── phone.txt │ 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