├── CODEX_SpleenDataset.zip ├── CellTypeEnrichmentAnalysis.zip ├── LICENSE ├── README.md ├── Tutorial ├── Supervised │ ├── MIBI-TNBC_Input │ │ ├── ImageNameList.txt │ │ ├── patient10_CellTypeLabel.txt │ │ ├── patient10_Coordinates.txt │ │ ├── patient10_GraphLabel.txt │ │ ├── patient11_CellTypeLabel.txt │ │ ├── patient11_Coordinates.txt │ │ ├── patient11_GraphLabel.txt │ │ ├── patient12_CellTypeLabel.txt │ │ ├── patient12_Coordinates.txt │ │ ├── patient12_GraphLabel.txt │ │ ├── patient13_CellTypeLabel.txt │ │ ├── patient13_Coordinates.txt │ │ ├── patient13_GraphLabel.txt │ │ ├── patient14_CellTypeLabel.txt │ │ ├── patient14_Coordinates.txt │ │ ├── patient14_GraphLabel.txt │ │ ├── patient16_CellTypeLabel.txt │ │ ├── patient16_Coordinates.txt │ │ ├── patient16_GraphLabel.txt │ │ ├── patient17_CellTypeLabel.txt │ │ ├── patient17_Coordinates.txt │ │ ├── patient17_GraphLabel.txt │ │ ├── patient18_CellTypeLabel.txt │ │ ├── patient18_Coordinates.txt │ │ ├── patient18_GraphLabel.txt │ │ ├── patient1_CellTypeLabel.txt │ │ ├── patient1_Coordinates.txt │ │ ├── patient1_GraphLabel.txt │ │ ├── patient20_CellTypeLabel.txt │ │ ├── patient20_Coordinates.txt │ │ ├── patient20_GraphLabel.txt │ │ ├── patient21_CellTypeLabel.txt │ │ ├── patient21_Coordinates.txt │ │ ├── patient21_GraphLabel.txt │ │ ├── patient23_CellTypeLabel.txt │ │ ├── patient23_Coordinates.txt │ │ ├── patient23_GraphLabel.txt │ │ ├── patient27_CellTypeLabel.txt │ │ ├── patient27_Coordinates.txt │ │ ├── patient27_GraphLabel.txt │ │ ├── patient28_CellTypeLabel.txt │ │ ├── patient28_Coordinates.txt │ │ ├── patient28_GraphLabel.txt │ │ ├── patient29_CellTypeLabel.txt │ │ ├── patient29_Coordinates.txt │ │ ├── patient29_GraphLabel.txt │ │ ├── patient2_CellTypeLabel.txt │ │ ├── patient2_Coordinates.txt │ │ ├── patient2_GraphLabel.txt │ │ ├── patient31_CellTypeLabel.txt │ │ ├── patient31_Coordinates.txt │ │ ├── patient31_GraphLabel.txt │ │ ├── patient32_CellTypeLabel.txt │ │ ├── patient32_Coordinates.txt │ │ ├── patient32_GraphLabel.txt │ │ ├── patient33_CellTypeLabel.txt │ │ ├── patient33_Coordinates.txt │ │ ├── patient33_GraphLabel.txt │ │ ├── patient34_CellTypeLabel.txt │ │ ├── patient34_Coordinates.txt │ │ ├── patient34_GraphLabel.txt │ │ ├── patient35_CellTypeLabel.txt │ │ ├── patient35_Coordinates.txt │ │ ├── patient35_GraphLabel.txt │ │ ├── patient36_CellTypeLabel.txt │ │ ├── patient36_Coordinates.txt │ │ ├── patient36_GraphLabel.txt │ │ ├── patient37_CellTypeLabel.txt │ │ ├── patient37_Coordinates.txt │ │ ├── patient37_GraphLabel.txt │ │ ├── patient38_CellTypeLabel.txt │ │ ├── patient38_Coordinates.txt │ │ ├── patient38_GraphLabel.txt │ │ ├── patient39_CellTypeLabel.txt │ │ ├── patient39_Coordinates.txt │ │ ├── patient39_GraphLabel.txt │ │ ├── patient3_CellTypeLabel.txt │ │ ├── patient3_Coordinates.txt │ │ ├── patient3_GraphLabel.txt │ │ ├── patient40_CellTypeLabel.txt │ │ ├── patient40_Coordinates.txt │ │ ├── patient40_GraphLabel.txt │ │ ├── patient41_CellTypeLabel.txt │ │ ├── patient41_Coordinates.txt │ │ ├── patient41_GraphLabel.txt │ │ ├── patient4_CellTypeLabel.txt │ │ ├── patient4_Coordinates.txt │ │ ├── patient4_GraphLabel.txt │ │ ├── patient5_CellTypeLabel.txt │ │ ├── patient5_Coordinates.txt │ │ ├── patient5_GraphLabel.txt │ │ ├── patient6_CellTypeLabel.txt │ │ ├── patient6_Coordinates.txt │ │ ├── patient6_GraphLabel.txt │ │ ├── patient7_CellTypeLabel.txt │ │ ├── patient7_Coordinates.txt │ │ ├── patient7_GraphLabel.txt │ │ ├── patient8_CellTypeLabel.txt │ │ ├── patient8_Coordinates.txt │ │ ├── patient8_GraphLabel.txt │ │ ├── patient9_CellTypeLabel.txt │ │ ├── patient9_Coordinates.txt │ │ └── patient9_GraphLabel.txt │ ├── Step1_ConstructCellularSpatialGraphs.py │ ├── Step2_TCNLearning_Supervised.py │ ├── Step3_TCNEnsemble.R │ └── Step4_ResultVisualization.py └── Unsupervised │ ├── MERFISH-Brain_Input │ ├── 10_-0.04_CellTypeLabel.txt │ ├── 10_-0.04_Coordinates.txt │ ├── 10_-0.09_CellTypeLabel.txt │ ├── 10_-0.09_Coordinates.txt │ ├── 10_-0.14_CellTypeLabel.txt │ ├── 10_-0.14_Coordinates.txt │ ├── 10_-0.19_CellTypeLabel.txt │ ├── 10_-0.19_Coordinates.txt │ ├── 10_-0.24_CellTypeLabel.txt │ ├── 10_-0.24_Coordinates.txt │ ├── 10_-0.29_CellTypeLabel.txt │ ├── 10_-0.29_Coordinates.txt │ ├── 11_-0.04_CellTypeLabel.txt │ ├── 11_-0.04_Coordinates.txt │ ├── 11_-0.09_CellTypeLabel.txt │ ├── 11_-0.09_Coordinates.txt │ ├── 11_-0.14_CellTypeLabel.txt │ ├── 11_-0.14_Coordinates.txt │ ├── 11_-0.19_CellTypeLabel.txt │ ├── 11_-0.19_Coordinates.txt │ ├── 11_-0.24_CellTypeLabel.txt │ ├── 11_-0.24_Coordinates.txt │ ├── 11_-0.29_CellTypeLabel.txt │ ├── 11_-0.29_Coordinates.txt │ ├── 12_0.11_CellTypeLabel.txt │ ├── 12_0.11_Coordinates.txt │ ├── 12_0.16_CellTypeLabel.txt │ ├── 12_0.16_Coordinates.txt │ ├── 12_0.21_CellTypeLabel.txt │ ├── 12_0.21_Coordinates.txt │ ├── 12_0.26_CellTypeLabel.txt │ ├── 12_0.26_Coordinates.txt │ ├── 13_0.11_CellTypeLabel.txt │ ├── 13_0.11_Coordinates.txt │ ├── 13_0.16_CellTypeLabel.txt │ ├── 13_0.16_Coordinates.txt │ ├── 13_0.21_CellTypeLabel.txt │ ├── 13_0.21_Coordinates.txt │ ├── 13_0.26_CellTypeLabel.txt │ ├── 13_0.26_Coordinates.txt │ ├── 14_0.11_CellTypeLabel.txt │ ├── 14_0.11_Coordinates.txt │ ├── 14_0.16_CellTypeLabel.txt │ ├── 14_0.16_Coordinates.txt │ ├── 14_0.21_CellTypeLabel.txt │ ├── 14_0.21_Coordinates.txt │ ├── 14_0.26_CellTypeLabel.txt │ ├── 14_0.26_Coordinates.txt │ ├── 15_0.11_CellTypeLabel.txt │ ├── 15_0.11_Coordinates.txt │ ├── 15_0.16_CellTypeLabel.txt │ ├── 15_0.16_Coordinates.txt │ ├── 15_0.21_CellTypeLabel.txt │ ├── 15_0.21_Coordinates.txt │ ├── 15_0.26_CellTypeLabel.txt │ ├── 15_0.26_Coordinates.txt │ ├── 16_0.11_CellTypeLabel.txt │ ├── 16_0.11_Coordinates.txt │ ├── 16_0.16_CellTypeLabel.txt │ ├── 16_0.16_Coordinates.txt │ ├── 16_0.21_CellTypeLabel.txt │ ├── 16_0.21_Coordinates.txt │ ├── 16_0.26_CellTypeLabel.txt │ ├── 16_0.26_Coordinates.txt │ ├── 17_0.11_CellTypeLabel.txt │ ├── 17_0.11_Coordinates.txt │ ├── 17_0.16_CellTypeLabel.txt │ ├── 17_0.16_Coordinates.txt │ ├── 17_0.21_CellTypeLabel.txt │ ├── 17_0.21_Coordinates.txt │ ├── 17_0.26_CellTypeLabel.txt │ ├── 17_0.26_Coordinates.txt │ ├── 18_0.11_CellTypeLabel.txt │ ├── 18_0.11_Coordinates.txt │ ├── 18_0.16_CellTypeLabel.txt │ ├── 18_0.16_Coordinates.txt │ ├── 18_0.21_CellTypeLabel.txt │ ├── 18_0.21_Coordinates.txt │ ├── 18_0.26_CellTypeLabel.txt │ ├── 18_0.26_Coordinates.txt │ ├── 19_0.11_CellTypeLabel.txt │ ├── 19_0.11_Coordinates.txt │ ├── 19_0.16_CellTypeLabel.txt │ ├── 19_0.16_Coordinates.txt │ ├── 19_0.21_CellTypeLabel.txt │ ├── 19_0.21_Coordinates.txt │ ├── 19_0.26_CellTypeLabel.txt │ ├── 19_0.26_Coordinates.txt │ ├── 1_-0.04_CellTypeLabel.txt │ ├── 1_-0.04_Coordinates.txt │ ├── 1_-0.09_CellTypeLabel.txt │ ├── 1_-0.09_Coordinates.txt │ ├── 1_-0.14_CellTypeLabel.txt │ ├── 1_-0.14_Coordinates.txt │ ├── 1_-0.19_CellTypeLabel.txt │ ├── 1_-0.19_Coordinates.txt │ ├── 1_-0.24_CellTypeLabel.txt │ ├── 1_-0.24_Coordinates.txt │ ├── 1_-0.29_CellTypeLabel.txt │ ├── 1_-0.29_Coordinates.txt │ ├── 1_0.01_CellTypeLabel.txt │ ├── 1_0.01_Coordinates.txt │ ├── 1_0.06_CellTypeLabel.txt │ ├── 1_0.06_Coordinates.txt │ ├── 1_0.11_CellTypeLabel.txt │ ├── 1_0.11_Coordinates.txt │ ├── 1_0.16_CellTypeLabel.txt │ ├── 1_0.16_Coordinates.txt │ ├── 1_0.21_CellTypeLabel.txt │ ├── 1_0.21_Coordinates.txt │ ├── 1_0.26_CellTypeLabel.txt │ ├── 1_0.26_Coordinates.txt │ ├── 20_0.11_CellTypeLabel.txt │ ├── 20_0.11_Coordinates.txt │ ├── 20_0.16_CellTypeLabel.txt │ ├── 20_0.16_Coordinates.txt │ ├── 20_0.21_CellTypeLabel.txt │ ├── 20_0.21_Coordinates.txt │ ├── 20_0.26_CellTypeLabel.txt │ ├── 20_0.26_Coordinates.txt │ ├── 21_0.11_CellTypeLabel.txt │ ├── 21_0.11_Coordinates.txt │ ├── 21_0.16_CellTypeLabel.txt │ ├── 21_0.16_Coordinates.txt │ ├── 21_0.21_CellTypeLabel.txt │ ├── 21_0.21_Coordinates.txt │ ├── 21_0.26_CellTypeLabel.txt │ ├── 21_0.26_Coordinates.txt │ ├── 22_0.11_CellTypeLabel.txt │ ├── 22_0.11_Coordinates.txt │ ├── 22_0.16_CellTypeLabel.txt │ ├── 22_0.16_Coordinates.txt │ ├── 22_0.21_CellTypeLabel.txt │ ├── 22_0.21_Coordinates.txt │ ├── 22_0.26_CellTypeLabel.txt │ ├── 22_0.26_Coordinates.txt │ ├── 23_0.11_CellTypeLabel.txt │ ├── 23_0.11_Coordinates.txt │ ├── 23_0.16_CellTypeLabel.txt │ ├── 23_0.16_Coordinates.txt │ ├── 23_0.21_CellTypeLabel.txt │ ├── 23_0.21_Coordinates.txt │ ├── 23_0.26_CellTypeLabel.txt │ ├── 23_0.26_Coordinates.txt │ ├── 24_0.11_CellTypeLabel.txt │ ├── 24_0.11_Coordinates.txt │ ├── 24_0.16_CellTypeLabel.txt │ ├── 24_0.16_Coordinates.txt │ ├── 24_0.21_CellTypeLabel.txt │ ├── 24_0.21_Coordinates.txt │ ├── 24_0.26_CellTypeLabel.txt │ ├── 24_0.26_Coordinates.txt │ ├── 25_0.11_CellTypeLabel.txt │ ├── 25_0.11_Coordinates.txt │ ├── 25_0.16_CellTypeLabel.txt │ ├── 25_0.16_Coordinates.txt │ ├── 25_0.21_CellTypeLabel.txt │ ├── 25_0.21_Coordinates.txt │ ├── 25_0.26_CellTypeLabel.txt │ ├── 25_0.26_Coordinates.txt │ ├── 26_0.11_CellTypeLabel.txt │ ├── 26_0.11_Coordinates.txt │ ├── 26_0.16_CellTypeLabel.txt │ ├── 26_0.16_Coordinates.txt │ ├── 26_0.21_CellTypeLabel.txt │ ├── 26_0.21_Coordinates.txt │ ├── 26_0.26_CellTypeLabel.txt │ ├── 26_0.26_Coordinates.txt │ ├── 27_0.11_CellTypeLabel.txt │ ├── 27_0.11_Coordinates.txt │ ├── 27_0.16_CellTypeLabel.txt │ ├── 27_0.16_Coordinates.txt │ ├── 28_0.11_CellTypeLabel.txt │ ├── 28_0.11_Coordinates.txt │ ├── 28_0.16_CellTypeLabel.txt │ ├── 28_0.16_Coordinates.txt │ ├── 28_0.21_CellTypeLabel.txt │ ├── 28_0.21_Coordinates.txt │ ├── 28_0.26_CellTypeLabel.txt │ ├── 28_0.26_Coordinates.txt │ ├── 29_0.11_CellTypeLabel.txt │ ├── 29_0.11_Coordinates.txt │ ├── 29_0.16_CellTypeLabel.txt │ ├── 29_0.16_Coordinates.txt │ ├── 29_0.21_CellTypeLabel.txt │ ├── 29_0.21_Coordinates.txt │ ├── 29_0.26_CellTypeLabel.txt │ ├── 29_0.26_Coordinates.txt │ ├── 2_-0.04_CellTypeLabel.txt │ ├── 2_-0.04_Coordinates.txt │ ├── 2_-0.09_CellTypeLabel.txt │ ├── 2_-0.09_Coordinates.txt │ ├── 2_-0.14_CellTypeLabel.txt │ ├── 2_-0.14_Coordinates.txt │ ├── 2_-0.19_CellTypeLabel.txt │ ├── 2_-0.19_Coordinates.txt │ ├── 2_-0.24_CellTypeLabel.txt │ ├── 2_-0.24_Coordinates.txt │ ├── 2_-0.29_CellTypeLabel.txt │ ├── 2_-0.29_Coordinates.txt │ ├── 2_0.01_CellTypeLabel.txt │ ├── 2_0.01_Coordinates.txt │ ├── 2_0.06_CellTypeLabel.txt │ ├── 2_0.06_Coordinates.txt │ ├── 2_0.11_CellTypeLabel.txt │ ├── 2_0.11_Coordinates.txt │ ├── 2_0.16_CellTypeLabel.txt │ ├── 2_0.16_Coordinates.txt │ ├── 2_0.21_CellTypeLabel.txt │ ├── 2_0.21_Coordinates.txt │ ├── 2_0.26_CellTypeLabel.txt │ ├── 2_0.26_Coordinates.txt │ ├── 30_0.11_CellTypeLabel.txt │ ├── 30_0.11_Coordinates.txt │ ├── 30_0.16_CellTypeLabel.txt │ ├── 30_0.16_Coordinates.txt │ ├── 30_0.21_CellTypeLabel.txt │ ├── 30_0.21_Coordinates.txt │ ├── 30_0.26_CellTypeLabel.txt │ ├── 30_0.26_Coordinates.txt │ ├── 31_0.11_CellTypeLabel.txt │ ├── 31_0.11_Coordinates.txt │ ├── 31_0.16_CellTypeLabel.txt │ ├── 31_0.16_Coordinates.txt │ ├── 31_0.21_CellTypeLabel.txt │ ├── 31_0.21_Coordinates.txt │ ├── 31_0.26_CellTypeLabel.txt │ ├── 31_0.26_Coordinates.txt │ ├── 32_0.11_CellTypeLabel.txt │ ├── 32_0.11_Coordinates.txt │ ├── 32_0.16_CellTypeLabel.txt │ ├── 32_0.16_Coordinates.txt │ ├── 32_0.21_CellTypeLabel.txt │ ├── 32_0.21_Coordinates.txt │ ├── 32_0.26_CellTypeLabel.txt │ ├── 32_0.26_Coordinates.txt │ ├── 33_0.11_CellTypeLabel.txt │ ├── 33_0.11_Coordinates.txt │ ├── 33_0.16_CellTypeLabel.txt │ ├── 33_0.16_Coordinates.txt │ ├── 33_0.21_CellTypeLabel.txt │ ├── 33_0.21_Coordinates.txt │ ├── 33_0.26_CellTypeLabel.txt │ ├── 33_0.26_Coordinates.txt │ ├── 34_0.11_CellTypeLabel.txt │ ├── 34_0.11_Coordinates.txt │ ├── 34_0.16_CellTypeLabel.txt │ ├── 34_0.16_Coordinates.txt │ ├── 34_0.21_CellTypeLabel.txt │ ├── 34_0.21_Coordinates.txt │ ├── 34_0.26_CellTypeLabel.txt │ ├── 34_0.26_Coordinates.txt │ ├── 35_0.11_CellTypeLabel.txt │ ├── 35_0.11_Coordinates.txt │ ├── 35_0.16_CellTypeLabel.txt │ ├── 35_0.16_Coordinates.txt │ ├── 35_0.21_CellTypeLabel.txt │ ├── 35_0.21_Coordinates.txt │ ├── 35_0.26_CellTypeLabel.txt │ ├── 35_0.26_Coordinates.txt │ ├── 36_0.11_CellTypeLabel.txt │ ├── 36_0.11_Coordinates.txt │ ├── 36_0.16_CellTypeLabel.txt │ ├── 36_0.16_Coordinates.txt │ ├── 36_0.21_CellTypeLabel.txt │ ├── 36_0.21_Coordinates.txt │ ├── 36_0.26_CellTypeLabel.txt │ ├── 36_0.26_Coordinates.txt │ ├── 3_0.01_CellTypeLabel.txt │ ├── 3_0.01_Coordinates.txt │ ├── 3_0.06_CellTypeLabel.txt │ ├── 3_0.06_Coordinates.txt │ ├── 3_0.11_CellTypeLabel.txt │ ├── 3_0.11_Coordinates.txt │ ├── 3_0.16_CellTypeLabel.txt │ ├── 3_0.16_Coordinates.txt │ ├── 3_0.21_CellTypeLabel.txt │ ├── 3_0.21_Coordinates.txt │ ├── 3_0.26_CellTypeLabel.txt │ ├── 3_0.26_Coordinates.txt │ ├── 4_-0.04_CellTypeLabel.txt │ ├── 4_-0.04_Coordinates.txt │ ├── 4_-0.09_CellTypeLabel.txt │ ├── 4_-0.09_Coordinates.txt │ ├── 4_-0.14_CellTypeLabel.txt │ ├── 4_-0.14_Coordinates.txt │ ├── 4_-0.19_CellTypeLabel.txt │ ├── 4_-0.19_Coordinates.txt │ ├── 4_-0.29_CellTypeLabel.txt │ ├── 4_-0.29_Coordinates.txt │ ├── 5_0.01_CellTypeLabel.txt │ ├── 5_0.01_Coordinates.txt │ ├── 5_0.06_CellTypeLabel.txt │ ├── 5_0.06_Coordinates.txt │ ├── 5_0.11_CellTypeLabel.txt │ ├── 5_0.11_Coordinates.txt │ ├── 5_0.16_CellTypeLabel.txt │ ├── 5_0.16_Coordinates.txt │ ├── 5_0.21_CellTypeLabel.txt │ ├── 5_0.21_Coordinates.txt │ ├── 5_0.26_CellTypeLabel.txt │ ├── 5_0.26_Coordinates.txt │ ├── 6_0.01_CellTypeLabel.txt │ ├── 6_0.01_Coordinates.txt │ ├── 6_0.06_CellTypeLabel.txt │ ├── 6_0.06_Coordinates.txt │ ├── 6_0.11_CellTypeLabel.txt │ ├── 6_0.11_Coordinates.txt │ ├── 6_0.16_CellTypeLabel.txt │ ├── 6_0.16_Coordinates.txt │ ├── 6_0.21_CellTypeLabel.txt │ ├── 6_0.21_Coordinates.txt │ ├── 6_0.26_CellTypeLabel.txt │ ├── 6_0.26_Coordinates.txt │ ├── 7_-0.04_CellTypeLabel.txt │ ├── 7_-0.04_Coordinates.txt │ ├── 7_-0.09_CellTypeLabel.txt │ ├── 7_-0.09_Coordinates.txt │ ├── 7_-0.14_CellTypeLabel.txt │ ├── 7_-0.14_Coordinates.txt │ ├── 7_-0.19_CellTypeLabel.txt │ ├── 7_-0.19_Coordinates.txt │ ├── 7_-0.24_CellTypeLabel.txt │ ├── 7_-0.24_Coordinates.txt │ ├── 7_-0.29_CellTypeLabel.txt │ ├── 7_-0.29_Coordinates.txt │ ├── 7_0.01_CellTypeLabel.txt │ ├── 7_0.01_Coordinates.txt │ ├── 7_0.06_CellTypeLabel.txt │ ├── 7_0.06_Coordinates.txt │ ├── 7_0.11_CellTypeLabel.txt │ ├── 7_0.11_Coordinates.txt │ ├── 7_0.16_CellTypeLabel.txt │ ├── 7_0.16_Coordinates.txt │ ├── 7_0.21_CellTypeLabel.txt │ ├── 7_0.21_Coordinates.txt │ ├── 7_0.26_CellTypeLabel.txt │ ├── 7_0.26_Coordinates.txt │ ├── 8_-0.04_CellTypeLabel.txt │ ├── 8_-0.04_Coordinates.txt │ ├── 8_-0.09_CellTypeLabel.txt │ ├── 8_-0.09_Coordinates.txt │ ├── 8_-0.14_CellTypeLabel.txt │ ├── 8_-0.14_Coordinates.txt │ ├── 8_-0.19_CellTypeLabel.txt │ ├── 8_-0.19_Coordinates.txt │ ├── 8_-0.24_CellTypeLabel.txt │ ├── 8_-0.24_Coordinates.txt │ ├── 8_-0.29_CellTypeLabel.txt │ ├── 8_-0.29_Coordinates.txt │ ├── 9_-0.04_CellTypeLabel.txt │ ├── 9_-0.04_Coordinates.txt │ ├── 9_-0.09_CellTypeLabel.txt │ ├── 9_-0.09_Coordinates.txt │ ├── 9_-0.14_CellTypeLabel.txt │ ├── 9_-0.14_Coordinates.txt │ ├── 9_-0.19_CellTypeLabel.txt │ ├── 9_-0.19_Coordinates.txt │ ├── 9_-0.24_CellTypeLabel.txt │ ├── 9_-0.24_Coordinates.txt │ ├── 9_-0.29_CellTypeLabel.txt │ ├── 9_-0.29_Coordinates.txt │ └── ImageNameList.txt │ ├── Step1_ConstructCellularSpatialGraphs.py │ ├── Step2_TCNLearning_Unsupervised.py │ ├── Step3_TCNEnsemble.R │ └── Step4_ResultVisualization.py ├── environment.yml ├── environment_linux.yml ├── environment_linux_gpu.yml ├── environment_windows_gpu.yml ├── requirements.txt └── support ├── Logo_CytoCommunity.png ├── Schematic_Diagram.png └── logo.png /CODEX_SpleenDataset.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/huBioinfo/CytoCommunity/HEAD/CODEX_SpleenDataset.zip -------------------------------------------------------------------------------- /CellTypeEnrichmentAnalysis.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/huBioinfo/CytoCommunity/HEAD/CellTypeEnrichmentAnalysis.zip -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/huBioinfo/CytoCommunity/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/huBioinfo/CytoCommunity/HEAD/README.md -------------------------------------------------------------------------------- /Tutorial/Supervised/MIBI-TNBC_Input/ImageNameList.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/huBioinfo/CytoCommunity/HEAD/Tutorial/Supervised/MIBI-TNBC_Input/ImageNameList.txt -------------------------------------------------------------------------------- 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