├── .DS_Store ├── BeAlog.txt ├── LICENSE ├── README.md ├── analysis ├── behavior_decomposing.m ├── behavior_decomposing_try.m ├── body_alignment.m ├── conKnl_DTAK.m ├── conKnl_DTAK.p ├── decompose_MoveEtho.m ├── decompose_Movement.m ├── decompose_Movement.p ├── decompose_poses.m ├── decompose_poses.p └── recluster_Movement.m ├── docs ├── .DS_Store └── Data Formatting.md ├── import ├── import_3d.m └── import_video.m ├── lib ├── .DS_Store ├── G2L_Slow.m ├── L2G_Slow.m ├── SegBarTrans.m ├── SegBarTransWhite.m ├── addMes2log.m ├── newSeg_BeA.m ├── newSeg_BeA.p ├── segAca_BeA.p ├── segAlg_BeA.m ├── segAlg_BeA.p ├── segHaca_BeA.m ├── segHaca_BeA.p └── status_judgment.m ├── preprocess ├── .DS_Store ├── ac_method1_mf.m ├── ac_method2_amf.m ├── amf1.m ├── amf_ac.m ├── artifact_correction.m ├── cut_data.m ├── lh_nd.m ├── mf_ac.m ├── mp_nd.m ├── nmf_ac.m ├── smooth_XYData.m └── smooth_XYadapt.m ├── run.m ├── run_batch.m ├── src ├── UMAP │ ├── license.txt │ ├── resources │ │ ├── addons_core.xml │ │ ├── matlab_path_entries.xml │ │ ├── metadata.xml │ │ ├── previewImage.png │ │ ├── screenshot.png │ │ └── umapFileExchange (1.3.3).zip │ ├── umap │ │ ├── Basics.java │ │ ├── Coder.m │ │ ├── CommaFormat.m │ │ ├── CpuInfo.java │ │ ├── Dbm.java │ │ ├── GridClusterEdge.java │ │ ├── Html.java │ │ ├── ImageButton.java │ │ ├── ImageIconColorer.java │ │ ├── StochasticGradientDescent.java │ │ ├── Supervisors.m │ │ ├── Template.m │ │ ├── UMAP.m │ │ ├── UmapUtil.m │ │ ├── approx_cross_entropy.m │ │ ├── categorical_simplicial_set_intersection.m │ │ ├── choose_optimize_layout.m │ │ ├── clip.m │ │ ├── compute_membership_strengths.m │ │ ├── cross_entropy.m │ │ ├── debugTiming.m │ │ ├── detectUnsupervised.m │ │ ├── divide_sparse.m │ │ ├── fast_intersection.m │ │ ├── find_ab_params.m │ │ ├── full_approx_cross_entropy.m │ │ ├── fuzzy_simplicial_set.m │ │ ├── general_simplicial_set_intersection.m │ │ ├── general_sset_intersection.m │ │ ├── initJava.m │ │ ├── init_transform.m │ │ ├── make_epochs_per_sample.m │ │ ├── nearest_neighbors.m │ │ ├── optimize_layout.m │ │ ├── optimize_layout2.m │ │ ├── optimize_layout3.m │ │ ├── optimize_layout4.m │ │ ├── optimize_layout5.m │ │ ├── probability_bin.m │ │ ├── probability_bin_labels.m │ │ ├── probability_means_weights_ptrs.m │ │ ├── remove_sparse.m │ │ ├── reset_local_connectivity.m │ │ ├── resupervise.m │ │ ├── run_umap.m │ │ ├── simplicial_set_embedding.m │ │ ├── smooth_knn_dist.m │ │ ├── spectral_layout.m │ │ ├── spectral_layout_binned.m │ │ ├── trainOptimize.m │ │ ├── umap.jar │ │ └── umap2.jar │ └── util │ │ ├── AdaptiveBins.m │ │ ├── BasicMap.m │ │ ├── Clumps.m │ │ ├── ClusterPlots.m │ │ ├── Clustered.m │ │ ├── Clusters.m │ │ ├── Density.m │ │ ├── DensityBiased.m │ │ ├── File.m │ │ ├── FileBasics.m │ │ ├── Gui.m │ │ ├── Html.m │ │ ├── MatBasics.m │ │ ├── MultiProps.m │ │ ├── Plots.m │ │ ├── PopUp.m │ │ ├── ProbabilityDensity2.m │ │ ├── QfHiDM.m │ │ ├── Radio.m │ │ ├── SortGui.m │ │ ├── String.m │ │ ├── StringArray.m │ │ ├── TopItems.m │ │ ├── ask.m │ │ ├── askYesOrNo.m │ │ ├── bsearch.m │ │ ├── clockwise.m │ │ ├── decodeMsg.m │ │ ├── fixClusterTear.m │ │ ├── getMessageType.m │ │ ├── getMsgTypeAndOptions.m │ │ ├── getjframe.m │ │ ├── gridEdge.m │ │ ├── javaPointToMatLab.m │ │ ├── javaScreens.m │ │ ├── mnuMultiDlg.m │ │ ├── msg.m │ │ ├── msgBox.m │ │ ├── questDlg.m │ │ ├── reportClusterMerging.m │ │ ├── resizeJavaPrefs.m │ │ ├── run_HiD_match.m │ │ ├── setAlwaysOnTopTimer.m │ │ └── showMsg.m ├── aca │ ├── addPath.m │ ├── data │ │ └── moc │ │ │ ├── 86 │ │ │ ├── 86.asf │ │ │ ├── 86_01.amc │ │ │ ├── 86_02.amc │ │ │ ├── 86_03.amc │ │ │ ├── 86_04.amc │ │ │ ├── 86_05.amc │ │ │ ├── 86_06.amc │ │ │ ├── 86_07.amc │ │ │ ├── 86_08.amc │ │ │ ├── 86_09.amc │ │ │ ├── 86_10.amc │ │ │ ├── 86_11.amc │ │ │ ├── 86_12.amc │ │ │ ├── 86_13.amc │ │ │ └── 86_14.amc │ │ │ └── mocap.txt │ ├── demoMocap.m │ ├── demoToy.m │ ├── demoToyH.m │ ├── lib │ │ ├── cell │ │ │ ├── cellCate.m │ │ │ ├── cellDim.m │ │ │ ├── cellFld.m │ │ │ ├── cellFldD.m │ │ │ ├── cellss.cpp │ │ │ ├── cellss.m │ │ │ ├── cellss.mexw64 │ │ │ ├── matFld.m │ │ │ ├── oness.cpp │ │ │ ├── oness.m │ │ │ ├── oness.mexw64 │ │ │ ├── stFld.m │ │ │ ├── zeross.cpp │ │ │ ├── zeross.m │ │ │ └── zeross.mexw64 │ │ ├── common │ │ │ ├── atof.cpp │ │ │ ├── atof.m │ │ │ ├── atof.mexw64 │ │ │ ├── atoi.cpp │ │ │ ├── atoi.m │ │ │ ├── atoi.mexw64 │ │ │ ├── divN.m │ │ │ ├── equal.m │ │ │ ├── fill0.m │ │ │ ├── floatFloor.m │ │ │ ├── idx2vis.m │ │ │ ├── matFetch.m │ │ │ ├── newLine.m │ │ │ ├── prom.m │ │ │ ├── randP.m │ │ │ ├── select.m │ │ │ ├── strloc.m │ │ │ ├── swap.m │ │ │ ├── tokenise.cpp │ │ │ ├── tokenise.mexw64 │ │ │ ├── tokeniseSlow.m │ │ │ ├── vec2str.m │ │ │ └── vis2dec.m │ │ ├── label │ │ │ ├── G2L.cpp │ │ │ ├── G2L.m │ │ │ ├── G2L.mexw64 │ │ │ ├── L2G.cpp │ │ │ ├── L2G.m │ │ │ ├── L2G.mexw64 │ │ │ └── ns2G.m │ │ ├── matrix │ │ │ ├── bandG.m │ │ │ ├── cenS.m │ │ │ ├── cenX.m │ │ │ ├── conDist.m │ │ │ ├── conKnl.m │ │ │ ├── eigk.m │ │ │ ├── knl2x.m │ │ │ ├── norDist.m │ │ │ ├── norX.m │ │ │ ├── rankX.m │ │ │ └── scaleX.m │ │ ├── option │ │ │ ├── cell2option.m │ │ │ ├── isY.m │ │ │ ├── ps.m │ │ │ ├── psShow.m │ │ │ └── psY.m │ │ ├── position │ │ │ ├── downSample.m │ │ │ ├── finds.m │ │ │ ├── float2block.m │ │ │ ├── frame2block.m │ │ │ ├── n2s.m │ │ │ └── vec2block.m │ │ ├── show │ │ │ ├── common │ │ │ │ ├── genMarkers.m │ │ │ │ ├── setBound.m │ │ │ │ └── showSeq.m │ │ │ ├── matrix │ │ │ │ └── showM.m │ │ │ └── seg │ │ │ │ ├── showSeg.m │ │ │ │ └── showSegBar.m │ │ ├── stat │ │ │ ├── a2rot.m │ │ │ ├── classMap.m │ │ │ ├── className.m │ │ │ ├── genCentre.m │ │ │ ├── genGauss.m │ │ │ ├── genGaussMod.m │ │ │ ├── genGausses.m │ │ │ ├── genUnif.m │ │ │ ├── genUnifD.m │ │ │ ├── genVar.m │ │ │ └── pickMaMiD.m │ │ └── subspace │ │ │ ├── cluEmp.m │ │ │ ├── cluSc.m │ │ │ ├── embed.m │ │ │ ├── evalClu.m │ │ │ ├── kmean.m │ │ │ ├── pca.m │ │ │ └── thEgy.m │ ├── make.m │ ├── readme │ └── src │ │ ├── ass │ │ ├── ass.m │ │ ├── assignmentoptimal.m │ │ ├── genConMatrix.m │ │ └── matchSeg.m │ │ ├── moc │ │ ├── dof │ │ │ ├── SpinCalc.m │ │ │ ├── amc2dof.m │ │ │ ├── ang2matrix.m │ │ │ ├── asf2skel.m │ │ │ ├── chan2cord.m │ │ │ ├── chan2xyz.m │ │ │ ├── dcm2q.m │ │ │ ├── deg2rad.m │ │ │ ├── dof2chan.m │ │ │ ├── dof2feat.m │ │ │ ├── dof2q.m │ │ │ ├── dofFilt.m │ │ │ ├── filt2name.m │ │ │ ├── getline.m │ │ │ ├── logq.m │ │ │ ├── matrix2ang.m │ │ │ ├── rad2deg.m │ │ │ ├── rotX.m │ │ │ └── treeFindParents.m │ │ ├── kitHuman.m │ │ ├── mocDof.m │ │ ├── mocFeat.m │ │ ├── mocHuman.m │ │ ├── mocPara.m │ │ ├── mocPart.m │ │ ├── mocPaths.m │ │ ├── mocSrc.m │ │ └── seg │ │ │ ├── mocSeg.m │ │ │ ├── mocSegData.m │ │ │ └── mocSegSrc.m │ │ ├── seg │ │ ├── aca │ │ │ ├── acaBack.cpp │ │ │ ├── acaBack.m │ │ │ ├── acaBack.mexw64 │ │ │ ├── acaBackSlow.m │ │ │ ├── acaFord.cpp │ │ │ ├── acaFord.m │ │ │ ├── acaFord.mexw64 │ │ │ ├── acaFordSlow.m │ │ │ ├── demoIni.m │ │ │ ├── dpSearch.m │ │ │ ├── objAca.m │ │ │ ├── objHaca.m │ │ │ ├── segAca.m │ │ │ └── segHaca.m │ │ ├── dtak │ │ │ ├── dtakBack.cpp │ │ │ ├── dtakBack.m │ │ │ ├── dtakBack.mexw64 │ │ │ ├── dtakBackSlow.m │ │ │ ├── dtakFord.cpp │ │ │ ├── dtakFord.m │ │ │ ├── dtakFord.mexw64 │ │ │ ├── dtakFordSlow.m │ │ │ ├── dtaksBack.m │ │ │ └── dtaksFord.m │ │ ├── gmm │ │ │ ├── filterI.m │ │ │ ├── filterSeg.m │ │ │ └── segGmm.m │ │ ├── help │ │ │ ├── I2Seg.m │ │ │ ├── I2SegAdd.m │ │ │ ├── keyPosH.m │ │ │ ├── newSeg.m │ │ │ ├── paraH2para.m │ │ │ ├── pickMid.m │ │ │ ├── sPick.m │ │ │ ├── seg2IH.m │ │ │ ├── segDef.m │ │ │ ├── segNewS.m │ │ │ ├── segPart.m │ │ │ ├── segPeak.m │ │ │ ├── subSeq.m │ │ │ └── tempoReduce.m │ │ ├── ini │ │ │ ├── conPropSim.cpp │ │ │ ├── conPropSim.m │ │ │ ├── conPropSim.mexa64 │ │ │ ├── conPropSim.mexmaci │ │ │ ├── conPropSim.mexw64 │ │ │ ├── conPropSimSlow.m │ │ │ ├── mergeDP.m │ │ │ ├── mergeI2H.m │ │ │ ├── segIni.m │ │ │ ├── segIniP.m │ │ │ └── segIniR.m │ │ ├── segAlg.m │ │ └── statSeg.m │ │ └── toy │ │ └── seg │ │ ├── newToySegMod.m │ │ ├── toySegMod.m │ │ ├── toySegModH.m │ │ ├── toySegSeq.m │ │ ├── toySegSeqH.m │ │ ├── toySegSeqNoi.m │ │ ├── toySegSeqNoiH.m │ │ ├── toySegSrc.m │ │ └── toySegSrcH.m └── cbrewer2 │ ├── cbrewer2.m │ ├── colorbrewer.mat │ ├── colorspace.zip │ ├── colorspace │ ├── colorspace │ │ ├── colorcalc.c │ │ ├── colorspace.c │ │ ├── colorspace.h │ │ ├── colorspace.html │ │ ├── colorspace.m │ │ ├── colorspace_01.jpg │ │ ├── colorspace_02.jpg │ │ ├── colorspace_03.jpg │ │ ├── colorspace_ciedemo.m │ │ ├── colorspace_demo.m │ │ └── colorspace_test.m │ └── license.txt │ └── requireFEXpackage.m └── tools ├── .DS_Store ├── calClus_qulity_fast.m ├── calcul_density_L1.m ├── calcul_embedding.m ├── decomposing_viewer.m ├── mapping_bahave.m ├── plot_behaveMap.m ├── plot_skeleton.m ├── plot_skeleton_figfun.m ├── plot_traj_map.m ├── re_cluster.m ├── re_clusterSimple.m ├── rm_traj_map.m ├── seg_video.m ├── video_play_only_figfun.m ├── video_play_with_data_figfun.m └── video_player.m /.DS_Store: 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