├── README.md ├── code_data_processing ├── 1-1.get_slide_date.py ├── 1-1.get_thumbnails.py ├── 1-2.prepare_omics_data.py ├── 1-3.get_size_info.py ├── 1-4.get_mutation_info.py ├── 2-1.extract_patches.py ├── 2-2.k_means_clustering.py ├── 2-4.fuse_clustering_and_manual.py ├── 3-1.color_norm.py ├── 3-2.feature_extraction.py ├── 4.split_dataset.py ├── 5.get_patient_characteristics.py ├── README.md └── stainNorm_Reinhard.py ├── code_prediction_on_breast_cancer ├── README.md ├── datafolder.py ├── generate_mutation_labels.py ├── generate_pathway_labels.py ├── models.py ├── options.py ├── run_mutation.sh ├── run_pathway.sh ├── test.py ├── train.py ├── utils.py └── visualization.py ├── code_validation_on_lung_and_liver ├── README.md ├── datafolder.py ├── generate_mutation_labels.py ├── generate_pathway_labels.py ├── models.py ├── options.py ├── run_mutation.sh ├── run_pathway.sh ├── test.py ├── train.py ├── utils.py └── visualization.py └── data ├── TCGA-BRCA ├── data_split.npy ├── 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