├── .gitignore ├── README.md ├── figures ├── fig1.png ├── logo.png ├── res_conic.png ├── res_isic.png ├── res_kits19.gif └── res_lits17.gif ├── requirements.txt ├── unet2d ├── NetworkTrainer │ ├── dataloaders │ │ ├── __pycache__ │ │ │ ├── dataload.cpython-38.pyc │ │ │ └── get_transform.cpython-38.pyc │ │ ├── data_prepare.py │ │ ├── dataload.py │ │ └── get_transform.py │ ├── get_result.py │ ├── get_result_all.py │ ├── network_inference.py │ ├── network_trainer.py │ ├── networks │ │ ├── __pycache__ │ │ │ ├── densenet.cpython-38.pyc │ │ │ ├── denseunet.cpython-38.pyc │ │ │ ├── resnet.cpython-38.pyc │ │ │ ├── resunet.cpython-38.pyc │ │ │ ├── unet.cpython-38.pyc │ │ │ ├── vit_seg_configs.cpython-38.pyc │ │ │ ├── vit_seg_modeling.cpython-38.pyc │ │ │ └── vit_seg_modeling_resnet_skip.cpython-38.pyc │ │ ├── densenet.py │ │ ├── denseunet.py │ │ ├── resnet.py │ │ ├── resunet.py │ │ ├── unet.py │ │ ├── vit_seg_configs.py │ │ ├── vit_seg_modeling.py │ │ └── vit_seg_modeling_resnet_skip.py │ ├── options.py │ ├── test.py │ ├── train.py │ └── utils │ │ ├── __pycache__ │ │ ├── accuracy.cpython-38.pyc │ │ ├── losses_imbalance.cpython-38.pyc │ │ ├── post_process.cpython-38.pyc │ │ └── util.cpython-38.pyc │ │ ├── accuracy.py │ │ ├── losses_imbalance.py │ │ ├── post_process.py │ │ └── util.py └── config │ ├── arch.sh │ ├── baseline.sh │ ├── da1.sh │ ├── da2.sh │ ├── da2flip.sh │ ├── da2rot.sh │ ├── da2scale.sh │ ├── da3.sh │ ├── da4.sh │ ├── deeps.sh │ ├── ensemble.sh │ ├── insnorm.sh │ ├── lossdice.sh │ ├── lossfocal.sh │ ├── lossohem.sh │ ├── losstversky.sh │ ├── losswce.sh │ ├── oversample.sh │ ├── patch32.sh │ ├── pretrain.sh │ ├── test_abl.sh │ ├── test_rsa.sh │ ├── tmp.sh │ └── tta.sh └── unet3d ├── NetworkTrainer ├── dataloaders │ ├── data_prepare.py │ ├── dataload.py │ └── get_transform.py ├── network_infer.py ├── network_trainer.py ├── networks │ └── unet.py ├── options │ ├── options.py │ ├── options_covid.py │ ├── options_kits.py │ └── options_liver.py ├── test.py ├── train.py └── utils │ ├── losses.py │ ├── post_process.py │ ├── test_util.py │ └── util.py └── config ├── baseline.sh ├── da1.sh ├── da2.sh ├── da2flip.sh ├── da2rot.sh ├── da2scale.sh ├── da3.sh ├── da4.sh ├── deeps.sh ├── ensemble.sh ├── insnorm.sh ├── lossdice.sh ├── lossfocal.sh ├── lossohem.sh ├── losstversky.sh ├── losswce.sh ├── oversample.sh ├── patch32.sh ├── pretrain.sh ├── test_abl.sh ├── test_rsa.sh └── tta.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hust-linyi/MedISeg/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hust-linyi/MedISeg/HEAD/README.md -------------------------------------------------------------------------------- /figures/fig1.png: 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