├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── config └── ds_z3_bf16_config.json ├── data ├── eval_dicom_ids.pickle ├── mimic-cxr-jpg │ ├── mimic-cxr-2.0.0-selected-pa-ap-earlist-study.pickle │ └── mimic-cxr-2.0.0-selected-pa-ap.pickle ├── mimic_cxr_img_list_test.txt └── mimic_cxr_img_list_train.txt ├── decode_cxr_all.py ├── encode_cxr_all.py ├── environment.yaml ├── environment_taming.yaml ├── generate_eval.py ├── generate_interactive.py ├── taming └── modules │ └── autoencoder │ └── lpips │ └── vgg.pth ├── train_llmcxr_stage1.sh ├── train_llmcxr_stage2.sh └── training ├── __init__.py ├── consts.py ├── generate.py ├── mimiccxr_vq_dataset.py ├── mimiccxr_vqa_dataset.py └── trainer.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /config/ds_z3_bf16_config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/config/ds_z3_bf16_config.json -------------------------------------------------------------------------------- /data/eval_dicom_ids.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/data/eval_dicom_ids.pickle -------------------------------------------------------------------------------- /data/mimic-cxr-jpg/mimic-cxr-2.0.0-selected-pa-ap-earlist-study.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/data/mimic-cxr-jpg/mimic-cxr-2.0.0-selected-pa-ap-earlist-study.pickle -------------------------------------------------------------------------------- /data/mimic-cxr-jpg/mimic-cxr-2.0.0-selected-pa-ap.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/data/mimic-cxr-jpg/mimic-cxr-2.0.0-selected-pa-ap.pickle -------------------------------------------------------------------------------- /data/mimic_cxr_img_list_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/data/mimic_cxr_img_list_test.txt -------------------------------------------------------------------------------- /data/mimic_cxr_img_list_train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/data/mimic_cxr_img_list_train.txt -------------------------------------------------------------------------------- /decode_cxr_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/decode_cxr_all.py -------------------------------------------------------------------------------- /encode_cxr_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/encode_cxr_all.py -------------------------------------------------------------------------------- /environment.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/environment.yaml -------------------------------------------------------------------------------- /environment_taming.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/environment_taming.yaml -------------------------------------------------------------------------------- /generate_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/generate_eval.py -------------------------------------------------------------------------------- /generate_interactive.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/generate_interactive.py -------------------------------------------------------------------------------- /taming/modules/autoencoder/lpips/vgg.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/taming/modules/autoencoder/lpips/vgg.pth -------------------------------------------------------------------------------- /train_llmcxr_stage1.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/train_llmcxr_stage1.sh -------------------------------------------------------------------------------- /train_llmcxr_stage2.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/train_llmcxr_stage2.sh -------------------------------------------------------------------------------- /training/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /training/consts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/training/consts.py -------------------------------------------------------------------------------- /training/generate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/training/generate.py -------------------------------------------------------------------------------- /training/mimiccxr_vq_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/training/mimiccxr_vq_dataset.py -------------------------------------------------------------------------------- /training/mimiccxr_vqa_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/training/mimiccxr_vqa_dataset.py -------------------------------------------------------------------------------- /training/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hyn2028/llm-cxr/HEAD/training/trainer.py --------------------------------------------------------------------------------