├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── custom.md │ └── feature_request.md ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── docs.yml │ ├── integration_tests.yml │ ├── package_and_test.yml │ ├── release.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CHANGES.rst ├── CONTRIBUTING.rst ├── LICENSE ├── MANIFEST.in ├── README.md ├── doc ├── Makefile ├── _static │ ├── exspy-banner-dark.png │ ├── exspy-banner-dark.svg │ ├── exspy-banner-light.png │ ├── exspy-banner-light.svg │ ├── exspy-logo-dark.png │ ├── exspy-logo-dark.svg │ ├── exspy-logo-light.png │ ├── exspy-logo-light.svg │ └── exspy.ico ├── changes.rst ├── conf.py ├── contributing.rst ├── index.rst ├── intro.rst ├── make.bat ├── reference │ ├── components.rst │ ├── data.rst │ ├── exspy.rst │ ├── index.rst │ ├── material.rst │ ├── models.rst │ ├── signals.rst │ ├── utils.eds.rst │ └── utils.eels.rst └── user_guide │ ├── bibliography.rst │ ├── dielectric_function.rst │ ├── eds.rst │ ├── eels.rst │ ├── images │ ├── EDS_background_subtraction.png │ ├── EDS_energy_axis_gui.png │ ├── EDS_fitting.png │ ├── EDS_get_lines_intensity.png │ ├── EDS_get_lines_intensity_all.png │ ├── EDS_integration_windows.png │ ├── EDS_microscope_parameters_gui.png │ ├── EDS_plot_Xray_a.png │ ├── EDS_plot_Xray_default.png │ ├── EDS_plot_spectrum.png │ ├── EDS_preferences_gui.png │ ├── EELS_BN_B_zoomin.png │ ├── EELS_BN_B_zoomin_with_gaussians.png │ ├── EELS_edges_at_energy.png │ ├── curve_fitting_BN.png │ ├── plot_images_eds.png │ ├── plot_images_eds_cmap_factors_side_by_side.png │ └── plot_images_eds_cmap_list.png │ ├── index.rst │ ├── install.rst │ └── metadata_structure.rst ├── examples ├── EDS │ ├── README.rst │ └── find_EDS_lines.py ├── README.rst └── model_fitting │ ├── EELS_curve_fitting.py │ ├── README.rst │ ├── coreloss_spectrum.msa │ ├── lowloss_spectrum.msa │ ├── plot_residual.py │ └── simple_arctan_fit.py ├── exspy ├── __init__.py ├── _defaults_parser.py ├── _docstrings │ ├── __init__.py │ ├── eds.py │ └── model.py ├── _misc │ ├── __init__.py │ ├── eds │ │ ├── __init__.py │ │ ├── ffast_mac.py │ │ ├── utils.py │ │ └── xray_lines.json │ ├── eels │ │ ├── __init__.py │ │ ├── base_gos.py │ │ ├── eels_binding_energies.json │ │ ├── eelsdb.py │ │ ├── effective_angle.py │ │ ├── electron_inelastic_mean_free_path.py │ │ ├── gosh_gos.py │ │ ├── hartree_slater_gos.py │ │ ├── hydrogenic_gos.py │ │ └── tools.py │ ├── elements.py │ ├── elements_general_properties.json │ └── material.py ├── _signal_tools.py ├── _utils.py ├── components │ ├── __init__.py │ ├── eels_arctan.py │ ├── eels_cl_edge.py │ ├── eels_double_power_law.py │ ├── eels_vignetting.py │ ├── pes_core_line_shape.py │ ├── pes_see.py │ ├── pes_voigt.py │ └── volume_plasmon_drude.py ├── conftest.py ├── data │ ├── EDS_SEM_TM002.hspy │ ├── EDS_TEM_FePt_nanoparticles.hspy │ └── __init__.py ├── hyperspy_extension.yaml ├── material.py ├── misc │ ├── __init__.py │ ├── eds │ │ ├── __init__.py │ │ └── utils.py │ ├── eels │ │ ├── _init__.py │ │ ├── electron_inelastic_mean_free_path.py │ │ └── tools.py │ ├── elements.py │ └── material.py ├── models │ ├── __init__.py │ ├── edsmodel.py │ ├── edssemmodel.py │ ├── edstemmodel.py │ └── eelsmodel.py ├── signals │ ├── __init__.py │ ├── dielectric_function.py │ ├── eds.py │ ├── eds_sem.py │ ├── eds_tem.py │ └── eels.py ├── tests │ ├── __init__.py │ ├── components │ │ ├── __init__.py │ │ ├── coreloss_spectrum.msa │ │ ├── lowloss_spectrum.msa │ │ ├── test_EELSarctan.py │ │ ├── test_double_power_law.py │ │ ├── test_eels_cl_edge.py │ │ ├── test_pes_core_line_shape.py │ │ ├── test_pes_see.py │ │ ├── test_pes_voigt.py │ │ └── test_volume_plasmon_drude.py │ ├── data │ │ ├── test_data.py │ │ └── test_eelsdb.py │ ├── drawing │ │ ├── __init__.py │ │ ├── data │ │ │ ├── Cr_L_cl.hspy │ │ │ └── Cr_L_ll.hspy │ │ ├── plot_model │ │ │ ├── test_fit_EELS_convolved_False.png │ │ │ ├── test_fit_EELS_convolved_True.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_False-False-False.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_False-False-True.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_False-True-False.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_False-True-True.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_True-False-False.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_True-False-True.png │ │ │ ├── test_plot_gaussian_EELSSpectrum_True-True-False.png │ │ │ └── test_plot_gaussian_EELSSpectrum_True-True-True.png │ │ ├── plot_spectra_markers │ │ │ ├── test_plot_eds_lines.png │ │ │ └── test_plot_eels_labels.png │ │ ├── test_plot_model.py │ │ └── test_plot_spectra_markers.py │ ├── misc │ │ ├── __init__.py │ │ ├── test_eds.py │ │ ├── test_eds_utils.py │ │ ├── test_eels.py │ │ ├── test_gos.py │ │ └── test_material.py │ ├── models │ │ ├── __init__.py │ │ ├── test_edsmodel.py │ │ ├── test_eelsmodel.py │ │ └── test_linear_model.py │ ├── signals │ │ ├── __init__.py │ │ ├── data │ │ │ ├── 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