├── .github ├── ISSUE_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── codeql-analysis.yml │ ├── docs.yml │ ├── package_and_test.yml │ ├── release.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CHANGES.rst ├── COPYING.txt ├── DEV-README.txt ├── README.rst ├── bin ├── hyperspyui_reg_linux_extensions.sh └── win_bundle_install.bat ├── doc ├── EDS_analysis_overview.png ├── Makefile ├── _static │ ├── header_logo.ai │ ├── header_logo.png │ └── hyperspy.ico ├── changes.rst ├── conf.py ├── dev_guide │ ├── index.rst │ ├── plugin_code_in.png │ ├── plugin_code_out.png │ ├── plugin_menu.png │ └── plugin_wizard.png ├── index.rst ├── make.bat └── user_guide │ ├── actions.rst │ ├── axes_configuration.png │ ├── axes_order.png │ ├── colormap_picker.png │ ├── console_widget.png │ ├── contrast_control.png │ ├── element_picker.png │ ├── index.rst │ ├── installation.rst │ ├── quickstart.rst │ ├── recorder_widget.png │ ├── settings.rst │ ├── tools.rst │ ├── troubleshooting.rst │ ├── ui_overview.png │ ├── virtual_apertures.png │ └── widgets.rst ├── hyperspyui ├── __init__.py ├── __main__.py ├── _elements.py ├── _tools │ ├── __init__.py │ ├── figuretool.py │ ├── gaussiantool.py │ ├── hometool.py │ ├── linetool.py │ ├── multiselectiontool.py │ ├── pointertool.py │ ├── selectiontool.py │ ├── signalfiguretool.py │ ├── tool.py │ └── zoompan.py ├── actionable.py ├── advancedaction.py ├── bindinglist.py ├── desktop_integration.py ├── desktop_integration_linux.py ├── desktop_integration_windows.py ├── exceptions.py ├── hooksignal.py ├── hooktraitsui.py ├── images │ ├── 3d.svg │ ├── Hypercube.ai │ ├── Hypercube.svg │ ├── add.svg │ ├── align2d.svg │ ├── align_horizontal.svg │ ├── align_manual.svg │ ├── align_vertical.svg │ ├── align_zero_loss.svg │ ├── analysis.svg │ ├── attributions.txt │ ├── bss.svg │ ├── candlestick.svg │ ├── chart.svg │ ├── chart_column.svg │ ├── chart_horz.svg │ ├── chart_stacked_column.svg │ ├── close.svg │ ├── close_window.svg │ ├── close_windows.svg │ ├── console.svg │ ├── crop.svg │ ├── divide.svg │ ├── download.svg │ ├── fft.svg │ ├── fft_capital_f.svg │ ├── fourier_ratio.svg │ ├── gaussian.svg │ ├── gaussian_bare.svg │ ├── home.svg │ ├── hyperspy.svg │ ├── hyperspy_logo.png │ ├── icon │ │ ├── hyperspy.ico │ │ ├── hyperspy128.png │ │ ├── hyperspy16.png │ │ ├── hyperspy22.png │ │ ├── hyperspy256.png │ │ ├── hyperspy32.png │ │ ├── hyperspy48.png │ │ └── hyperspy64.png │ ├── ifft.svg │ ├── infft.svg │ ├── intersection.svg │ ├── line_plot.svg │ ├── live_fft.png │ ├── live_fft.svg │ ├── magnifier.svg │ ├── max.svg │ ├── mean.svg │ ├── min.svg │ ├── mirror.svg │ ├── move.svg │ ├── move2.svg │ ├── multiply.svg │ ├── new_file.svg │ ├── nfft.svg │ ├── open.svg │ ├── panzoom.svg │ ├── panzoom2.svg │ ├── pca.svg │ ├── periodic_table.svg │ ├── periodic_table2.svg │ ├── photo_contrast.svg │ ├── photo_contrast2.svg │ ├── picker.svg │ ├── pointer.svg │ ├── power_law.ai │ ├── power_law.svg │ ├── rebin.svg │ ├── regression.svg │ ├── renko.svg │ ├── rotate.svg │ ├── ruler.svg │ ├── save.svg │ ├── scatter.svg │ ├── segmentation.svg │ ├── slider.svg │ ├── splash.ai │ ├── splash.png │ ├── spline_chart.svg │ ├── stddev.svg │ ├── subtract.svg │ ├── sum.svg │ ├── t_over_lambda.ai │ ├── t_over_lambda.svg │ ├── temperature.svg │ ├── testing_icon_coloring.py │ ├── text_field.svg │ ├── variance.svg │ ├── video.svg │ ├── visibility_off.svg │ ├── visibility_off2.svg │ ├── visibility_on.svg │ ├── visibility_on2.svg │ ├── zero_loss.svg │ └── zoom.svg ├── ipython_profile │ └── ipython_embedded_config.py ├── log.py ├── mainwindow.py ├── mainwindowbase.py ├── mainwindowhyperspy.py ├── mainwindowutillayer.py ├── mdi_mpl_backend.py ├── modelwrapper.py ├── overrides.py ├── plugincreator.py ├── pluginmanager.py ├── plugins │ ├── __init__.py │ ├── align.py │ ├── alignzlp.py │ ├── axesconf.py │ ├── axesorderwidget.py │ ├── basicsignal.py │ ├── basicspectrum.py │ ├── cmappicker.py │ ├── croptool.py │ ├── dataastext.py │ ├── dmannotations.py │ ├── eelsdb.py │ ├── fft.py │ ├── fitting.py │ ├── gaussianfilter.py │ ├── gitgetter.py │ ├── imagerotation.py │ ├── linemeasure.py │ ├── metadataeditor.py │ ├── mirrorplot.py │ ├── moviesaver.py │ ├── mva.py │ ├── plotutils.py │ ├── plugin.py │ ├── rebin.py │ ├── recorderwidget.py │ ├── segmentation.py │ ├── stylesheet.py │ ├── tightlayout.py │ ├── user_plugins │ │ └── __init__.py │ └── virtual_aperture.py ├── recorder.py ├── settings.py ├── signalwrapper.py ├── singleapplication.py ├── smartcolorsvgiconengine.py ├── tests │ ├── conftest.py │ ├── single_app.py │ ├── test_backend.py │ ├── test_launch.py │ ├── test_load.py │ ├── test_mainwindow.py │ ├── test_plotting.py │ └── test_single_application.py ├── threaded.py ├── tools.py ├── uiprogressbar.py ├── util.py └── widgets │ ├── __init__.py │ ├── _editor_server.py │ ├── axespicker.py │ ├── colorpicker.py │ ├── consolewidget.py │ ├── dataviewwidget.py │ ├── editorwidget.py │ ├── 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