├── .gitignore ├── DeepAutoFocus ├── config.xml ├── pom.xml └── src │ └── main │ ├── java │ └── ch │ │ └── idiap │ │ └── cbi │ │ ├── DeepAutoFocus.java │ │ └── DeepAutoFocusClient.java │ └── proto │ └── deepfocus.proto ├── DeepFocusGUI ├── .gitignore ├── pom.xml └── src │ └── main │ ├── java │ └── ch │ │ └── idiap │ │ └── cbi │ │ ├── DeepFocusGUI.java │ │ ├── DeepFocusGUIClient.java │ │ ├── DeepFocusGUIFrame.form │ │ ├── DeepFocusGUIFrame.java │ │ ├── DeepFocusScripting.java │ │ └── ZMovement.java │ └── proto │ └── deepfocus.proto ├── LICENSE ├── README.md ├── detection ├── calibration_fit.py ├── compile_grpc.sh ├── data │ ├── .gitattributes │ ├── 05-03-2020-17_37_43_PROJ_9011_LR_0.0001_BS_30_N_unet_resnet_ATT_False_MODEL_resnet34unetanneal_EXPORT_37.pth │ └── texture.png ├── deepfocus.proto ├── deepfocus_pb2.py ├── deepfocus_pb2_grpc.py ├── radam.py ├── requirements.txt ├── run_grpc.py ├── simulations_plot.py ├── toolbox.py └── unet_detector.py └── javabinaries ├── mmplugins ├── DeepAutoFocus-0.1.jar └── DeepFocusGUI-0.1.jar └── plugins └── Micro-Manager ├── MMAcqEngine-2.0-GAMMA.jar ├── MMCoreJ-2.0-GAMMA.jar ├── MMJ_-2.0-GAMMA.jar ├── animal-sniffer-annotations-1.17.jar ├── beansbinding-1.2.1.jar ├── checker-compat-qual-2.5.2.jar ├── commons-codec-1.3.jar ├── commons-lang3-3.5.jar ├── commons-logging-1.1.1.jar ├── error_prone_annotations-2.2.0.jar ├── eventbus-1.4.jar ├── google-auth-library-credentials-0.9.0.jar ├── google-auth-library-oauth2-http-0.9.0.jar ├── google-http-client-1.19.0.jar ├── google-http-client-jackson2-1.19.0.jar ├── grpc-all-1.16.1.jar ├── grpc-alts-1.16.1.jar ├── grpc-auth-1.16.1.jar ├── grpc-context-1.16.1.jar ├── grpc-core-1.16.1.jar ├── grpc-grpclb-1.16.1.jar ├── grpc-netty-1.16.1.jar ├── grpc-netty-shaded-1.16.1.jar ├── grpc-okhttp-1.16.1.jar ├── grpc-protobuf-1.16.1.jar ├── grpc-protobuf-lite-1.16.1.jar ├── grpc-protobuf-nano-1.16.1.jar ├── grpc-stub-1.16.1.jar ├── grpc-testing-1.16.1.jar ├── gson-2.7.jar ├── guava-26.0-android.jar ├── hamcrest-core-1.3.jar ├── httpclient-4.0.1.jar ├── httpcore-4.0.1.jar ├── ij-1.51s.jar ├── j2objc-annotations-1.1.jar ├── jackson-core-2.1.3.jar ├── jsr305-3.0.2.jar ├── junit-4.12.jar ├── miglayout-3.7.4.jar ├── mockito-core-1.9.5.jar ├── netty-buffer-4.1.30.Final.jar ├── netty-codec-4.1.30.Final.jar ├── netty-codec-http-4.1.30.Final.jar ├── netty-codec-http2-4.1.30.Final.jar ├── netty-codec-socks-4.1.30.Final.jar ├── netty-common-4.1.30.Final.jar ├── netty-handler-4.1.30.Final.jar ├── netty-handler-proxy-4.1.30.Final.jar ├── netty-resolver-4.1.30.Final.jar ├── netty-transport-4.1.30.Final.jar ├── objenesis-1.0.jar ├── okhttp-2.5.0.jar ├── okio-1.13.0.jar ├── opencensus-api-0.12.3.jar ├── opencensus-contrib-grpc-metrics-0.12.3.jar ├── parsington-1.0.3.jar ├── proto-google-common-protos-1.0.0.jar ├── protobuf-java-3.5.1.jar ├── protobuf-java-util-3.5.1.jar ├── protobuf-javanano-3.0.0-alpha-5.jar ├── rsyntaxtextarea-2.6.1.jar ├── scijava-common-2.77.0.jar └── tools-1.4.2.jar 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