├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── test-coverage.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── add1.R ├── bracl.R ├── brglm2-defunct.R ├── brglm2-package.R ├── brglmControl.R ├── brglmFit.R ├── brmultinom.R ├── brnb.R ├── data.R ├── drop1.R ├── expo.R ├── mdyplFit.R ├── mis-link.R ├── ordinal_superiority.R ├── plrtest.R ├── se.R ├── solve_se.R ├── summary-mdyplFit.R ├── utils.R ├── warnings.R └── zzz_conventions.R ├── README.Rmd ├── README.md ├── data ├── MultipleFeatures.rda ├── aids.rda ├── alligators.rda ├── coalition.rda ├── endometrial.rda ├── enzymes.rda ├── hepatitis.rda ├── lizards.rda └── stemcell.rda ├── inst ├── CITATION ├── WORDLIST ├── brpr │ ├── brpr.R │ ├── examples.R │ └── timings.R ├── glmbias_code+results │ ├── alligator_simulation_results.rda │ ├── birth_weight_simulation_results.rda │ ├── clotting_simulation_results.rda │ ├── glmbias_gamma_simulation.R │ ├── glmbias_logistic_simulation.R │ ├── glmbias_multinomial_simulation.R │ └── glmbias_simulation_functions.R ├── mbrpr │ └── mbrpr.R └── tinytest │ ├── brpr.R │ ├── mbrpr.R │ ├── test-binomial.R │ ├── test-bracl.R │ ├── test-brglmControl.R │ ├── test-brnp.R │ ├── test-checkinfinite.R │ ├── test-correction.R │ ├── test-dispersion.R │ ├── test-expo.R │ ├── test-gamma.R │ ├── test-jeffreys.R │ ├── test-mdyplFit.R │ ├── test-median-binomial.R │ ├── test-median-dispersion.R │ ├── test-median-poisson.R │ ├── test-mis.R │ ├── test-multinom-binom.R │ ├── test-multinom.R │ ├── test-poisson.R │ ├── test-print.R │ ├── test-se.R │ ├── test-singular.R │ ├── test-start.R │ ├── test-summary_mdyplFit.R │ └── test-transformation.R ├── man ├── MultipleFeatures.Rd ├── aids.Rd ├── alligators.Rd ├── bracl.Rd ├── brglm2-defunct.Rd ├── brglm2.Rd ├── brglmControl.Rd ├── brglmFit.Rd ├── brmultinom.Rd ├── brnb.Rd ├── coalition.Rd ├── coef.brglmFit.Rd ├── coef.brglmFit_expo.Rd ├── coef.brnb.Rd ├── confint.brglmFit.Rd ├── confint.brmultinom.Rd ├── confint.brnb.Rd ├── confint.mdyplFit.Rd ├── endometrial.Rd ├── enzymes.Rd ├── expo.brglmFit.Rd ├── figures │ ├── README-unnamed-chunk-11-1.png │ ├── README-unnamed-chunk-6-1.png │ └── hex_brglm2.svg ├── hepatitis.Rd ├── lizards.Rd ├── mdyplControl.Rd ├── mdyplFit.Rd ├── mis.Rd ├── ordinal_superiority.bracl.Rd ├── plrtest.mdyplFit.Rd ├── predict.bracl.Rd ├── predict.brmultinom.Rd ├── residuals.brmultinom.Rd ├── se0.Rd ├── se0_ridge.Rd ├── se1.Rd ├── simulate.brmultinom.Rd ├── simulate.brnb.Rd ├── sloe.Rd ├── solve_se.Rd ├── stemcell.Rd ├── summary.brglmFit.Rd ├── summary.brnb.Rd ├── summary.mdyplFit.Rd ├── vcov.brglmFit.Rd └── vcov.brnb.Rd ├── src ├── expectations.c ├── hats.c └── init.c ├── tests └── tinytest.R └── vignettes ├── adjacent.Rmd ├── brglm2.bib ├── expo.Rmd ├── iteration.Rmd ├── multinomial.Rmd └── negativeBinomial.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- 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