├── Dockerfile ├── README.md ├── Scripts └── ProcessMergedBam.py ├── config.yaml ├── exodus.smk └── test_data ├── Combined_relative_abundances.csv ├── MG030346.1.fasta ├── MN604053.1.fasta ├── MN840486.1.fasta ├── R1.fastq └── R2.fastq /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/Dockerfile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/README.md -------------------------------------------------------------------------------- /Scripts/ProcessMergedBam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/Scripts/ProcessMergedBam.py -------------------------------------------------------------------------------- /config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/config.yaml -------------------------------------------------------------------------------- /exodus.smk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/exodus.smk -------------------------------------------------------------------------------- /test_data/Combined_relative_abundances.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/Combined_relative_abundances.csv -------------------------------------------------------------------------------- /test_data/MG030346.1.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/MG030346.1.fasta -------------------------------------------------------------------------------- /test_data/MN604053.1.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/MN604053.1.fasta -------------------------------------------------------------------------------- /test_data/MN840486.1.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/MN840486.1.fasta -------------------------------------------------------------------------------- /test_data/R1.fastq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/R1.fastq -------------------------------------------------------------------------------- /test_data/R2.fastq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ilyavs/exodus/HEAD/test_data/R2.fastq --------------------------------------------------------------------------------