├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── Parallelized Bash Script ├── .DS_Store ├── SCENT_parallelization.R └── parallelizedSCENT.sh ├── R ├── .gitignore ├── SCENTfunctions.R └── import_packages.R ├── README.md ├── SCENT.Rproj ├── data └── GeneBody_500kb_margin.bed ├── fig ├── .DS_Store ├── cover_image.png └── cover_image2.png ├── man ├── CreatePeakToGeneList.Rd ├── SCENT-class.Rd ├── SCENT_algorithm.Rd ├── assoc_negbin.Rd ├── assoc_poisson.Rd ├── basic_p.Rd ├── check_dimensions.Rd └── interp_pval.Rd └── vignettes ├── .gitignore ├── SCENT_interactive.Rmd └── SCENT_parallelize.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/immunogenomics/SCENT/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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