├── .github └── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── docs ├── .buildinfo ├── .nojekyll ├── _sources │ ├── index.rst.txt │ ├── modules.rst.txt │ ├── spiralfmri.Acq.pypulseq.rst.txt │ ├── spiralfmri.Acq.rst.txt │ ├── spiralfmri.Recon.rst.txt │ └── spiralfmri.rst.txt ├── _static │ ├── basic.css │ ├── classic.css │ ├── doctools.js │ ├── documentation_options.js │ ├── file.png │ ├── jquery-3.4.1.js │ ├── jquery.js │ ├── language_data.js │ ├── minus.png │ ├── plus.png │ ├── pygments.css │ ├── searchtools.js │ ├── sidebar.js │ ├── underscore-1.3.1.js │ └── underscore.js ├── genindex.html ├── index.html ├── modules.html ├── objects.inv ├── py-modindex.html ├── search.html ├── searchindex.js ├── spiralfmri.Acq.html ├── spiralfmri.Acq.pypulseq.html ├── spiralfmri.Recon.html └── spiralfmri.html ├── images ├── 1_9_19_29_39_49.png ├── 2D_spiral_rot.png ├── 3D_ksp.png ├── g_interp.png ├── g_interp2.png ├── rf_g_limits.png ├── rf_interp.png ├── rf_interp2.png └── spiral_rot.png ├── pull_request_template.md ├── requirements.txt ├── spiral-fmri ├── Acq │ └── TOPPE │ │ ├── README.md │ │ ├── getparams.m │ │ ├── main.m │ │ ├── scanloop.txt │ │ └── zInd.mat └── Recon │ ├── assets │ ├── ktraj_single_kz.mat │ ├── ktraj_single_kz_v2.mat │ ├── ktraj_single_kz_v3.mat │ ├── shepp-logan.mat │ └── shepp-logan.npy │ ├── recon_main.m │ ├── rfphs.mat │ ├── rfphs_compensate.m │ ├── rfphs_vector.m │ └── shepp_logan.net └── spiralfmri └── Acq └── pypulseq ├── archimedian.py ├── g2k.py ├── getparams.py ├── interpolation.py ├── makeSystemlength.py ├── make_balanced.py ├── make_crusher.py ├── make_slr_rf.py ├── spiral_fmri_pypulseq_v1.py ├── spiralfmri_testing.py ├── testing_assets ├── arch_spiral.mat ├── arch_spiral_gxbalanced.mat ├── gcrusher.mat ├── gss_slr.mat └── rf_slr.mat └── trapwave2.py /.github/ISSUE_TEMPLATE/bug_report.md: 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