├── .github └── workflows │ └── update_notifier.yml ├── .gitignore ├── LICENSE.txt ├── README.md ├── ibc_data ├── 3mm_ref.nii.gz ├── README.md ├── all_contrasts.tsv ├── contrasts │ ├── 1_condition_renaming.csv │ ├── Abstraction.csv │ ├── ArchiEmotional.csv │ ├── ArchiSocial.csv │ ├── ArchiSpatial.csv │ ├── ArchiStandard.csv │ ├── Attention.csv │ ├── Audi.csv │ ├── Audio.csv │ ├── Bang.csv │ ├── BiologicalMotion1.csv │ ├── BiologicalMotion2.csv │ ├── BreathHolding.csv │ ├── Catell_oddball.csv │ ├── Checkerboard.csv │ ├── Color.csv │ ├── ColumbiaCards.csv │ ├── Discount.csv │ ├── DotPatterns.csv │ ├── EmoMem.csv │ ├── EmoReco.csv │ ├── Emotion.csv │ ├── EmotionalPain.csv │ ├── Enumeration.csv │ ├── FaceBody.csv │ ├── FacesAomic.csv │ ├── FingerTap.csv │ ├── FingerTapping.csv │ ├── HarririAomic.csv │ ├── HcpEmotion.csv │ ├── HcpGambling.csv │ ├── HcpLanguage.csv │ ├── HcpMotor.csv │ ├── HcpRelational.csv │ ├── HcpSocial.csv │ ├── HcpWm.csv │ ├── ItemRecognition.csv │ ├── Lec1.csv │ ├── Lec2.csv │ ├── LocalizerAbstraction.csv │ ├── MCSE.csv │ ├── MDTB.csv │ ├── MTTNS.csv │ ├── MTTWE.csv │ ├── MVEB.csv │ ├── MVIS.csv │ ├── MathLanguage.csv │ ├── Motion.csv │ ├── Moto.csv │ ├── MultiModal.csv │ ├── NARPS.csv │ ├── OptimismBias.csv │ ├── PainMovie.csv │ ├── PreferenceFaces.csv │ ├── PreferenceFood.csv │ ├── PreferenceHouses.csv │ ├── PreferencePaintings.csv │ ├── RSVPLanguage.csv │ ├── RewProc.csv │ ├── Ring.csv │ ├── Scene.csv │ ├── SelectiveStopSignal.csv │ ├── Self.csv │ ├── SpatialNavigation.csv │ ├── StopNogo.csv │ ├── StopSignal.csv │ ├── Stroop.csv │ ├── StroopAomic.csv │ ├── TheoryOfMind.csv │ ├── TwoByTwo.csv │ ├── VSTM.csv │ ├── VSTMC.csv │ ├── Visu.csv │ ├── VisualSearch.csv │ ├── WardAndAllport.csv │ ├── Wedge.csv │ └── WorkingMemoryAomic.csv ├── descriptions.json ├── gm_mask_1_5mm.nii.gz ├── gm_mask_3mm.nii.gz ├── ibc_conditions.tsv ├── ibc_tasks.tsv ├── main_contrasts.tsv └── sessions.csv ├── ibc_public ├── __init__.py ├── connectivity │ ├── utils_fc_classification.py │ ├── utils_fc_estimation.py │ ├── utils_plot.py │ ├── utils_sc_estimation.py │ └── utils_similarity.py ├── utils_annotations.py ├── utils_contrasts.py ├── utils_data.py ├── utils_descriptions.py ├── utils_labels.py ├── utils_paradigm.py ├── utils_pipeline.py ├── utils_relaxo.py └── utils_retino.py ├── papers_scripts ├── F10002020 │ └── MVPA │ │ ├── decoding_inter.py │ │ └── utils_tonotopy.py ├── README.md ├── gradients │ ├── gm_mask_2mm.nii.gz │ ├── script_hcp.py │ ├── script_ibc.py │ └── utils.py ├── hbm2021 │ ├── README.md │ ├── adapted_lang.py │ ├── archi_contrasts.csv │ ├── bids_postprocessed.json │ ├── comparison_hcp.py │ ├── conjunction_vs_rfx.py │ ├── contrast_reliability.py │ ├── contrast_reliability_hcp.py │ ├── dictionary_labels.py │ ├── dictionary_learning.py │ ├── dictionary_stability.py │ ├── grey_mask_img.py │ ├── hcp_contrasts.csv │ ├── hcplang_rois.py │ ├── intra_inter_reliability.py │ ├── predictive_model.py │ ├── rois_hcplang900_z16 │ │ ├── left_FG.nii.gz │ │ ├── left_FG.png │ │ ├── left_FP.nii.gz │ │ ├── left_FP.png │ │ ├── left_IFG.nii.gz │ │ ├── left_IFG.png │ │ ├── left_TPJ.nii.gz │ │ ├── left_TPJ.png │ │ ├── left_aSTS_TP.nii.gz │ │ ├── left_aSTS_TP.png │ │ ├── left_pSTS.nii.gz │ │ ├── left_pSTS.png │ │ ├── vmPFC.nii.gz │ │ └── vmPFC.png │ ├── rois_lang.py │ ├── rois_pallier │ │ ├── IFGorb.nii.gz │ │ ├── IFGtri.nii.gz │ │ ├── Precentral_Pallier_2011.nii.gz │ │ ├── Putamen.nii.gz │ │ ├── TP.nii.gz │ │ ├── TPJ.nii.gz │ │ ├── aSTS.nii.gz │ │ ├── dmPFC_Pallier_2011.nii.gz │ │ └── pSTS.nii.gz │ ├── utils_dictionary.py │ └── utils_surface_plots.py ├── neuroimage2021 │ ├── README.md │ ├── gm_mask_2mm.nii.gz │ ├── script_hcp.py │ ├── script_ibc.py │ └── utils.py ├── scidata2018 │ ├── README.md │ ├── brain_coverage.py │ ├── cognitive_atlas.csv │ ├── data_quality.py │ ├── global_stat.py │ ├── more_snapshots.py │ └── snapshots.py ├── scidata2020 │ ├── README.md │ ├── behavioral_data │ │ ├── README.md │ │ ├── behav_utils.py │ │ ├── success_rate_enumeration.py │ │ ├── success_rate_mtt.py │ │ ├── success_rate_self.py │ │ ├── success_rate_tom.py │ │ └── success_rate_vstm.py │ └── neuroimaging_data │ │ ├── bids_postprocessed.json │ │ ├── bids_preprocessed.json │ │ ├── brain_coverage2.py │ │ ├── data_quality2.py │ │ └── global_stat2.py └── scidata2023 │ ├── fastsrm_encoding.py │ ├── fastsrm_preprocess.py │ ├── fastsrm_surface_secondlevel.py │ ├── ibc_fastsrm_utils.py │ ├── script_retino.py │ ├── script_retinotopic_maps.py │ ├── surfimg_visualization.py │ └── volimg_visualization.py ├── scripts ├── anatomical_mapping.py ├── b02b0.cnf ├── b0_acquisition_params_AP.txt ├── cluster_bundles.py ├── connectivity │ ├── estimate_fc_calculate_similarity.py │ ├── estimate_fc_classify_fc.py │ ├── estimate_sc.py │ ├── estimate_sc_README.md │ ├── plotting │ │ ├── plot_all_accuracy_table.py │ │ ├── plot_classifier_coefficients.py │ │ ├── plot_connectomes.py │ │ ├── plot_fcfc_similarity.py │ │ ├── plot_fcsc_similarity.py │ │ ├── plot_fcsc_similarity_network_wise.py │ │ ├── plot_generalize_connectomes.py │ │ ├── plot_generalize_distributions.py │ │ ├── plot_methods_fmri_surf.py │ │ ├── plot_methods_rbg_regions.py │ │ ├── plot_multi_task_classification_accuracy.py │ │ ├── plot_reliability.py │ │ └── plot_within_binary_task_classification_accuracy.py │ └── supplementary │ │ ├── _basic_fc_estimation_pipeline.py │ │ ├── _estimate_fc_classify_fc_HCP.py │ │ ├── compile_sc_in_dataframe.py │ │ ├── estimate_fc_external_gbu.py │ │ ├── estimate_fc_ibc_sync_external.py │ │ ├── generalize_baseline.py │ │ ├── generalize_external_to_ibc.py │ │ ├── generalize_ibc_to_external.py │ │ ├── reliability_movie_v_rest.py │ │ └── umap_ibc_external_gbu.py ├── dmri_preprocessing.py ├── dmri_preprocessing_tractography.py ├── expert.opts ├── glm_only.py ├── ini_files │ ├── IBC_preproc_BBT1.ini │ ├── IBC_preproc_BBT2.ini │ ├── IBC_preproc_BBT3.ini │ ├── IBC_preproc_abstraction.ini │ ├── IBC_preproc_anat1.ini │ ├── IBC_preproc_aomic.ini │ ├── IBC_preproc_archi.ini │ ├── IBC_preproc_audio1.ini │ ├── IBC_preproc_audio1_sub-08.ini │ ├── IBC_preproc_audio2.ini │ ├── IBC_preproc_biological_motion.ini │ ├── IBC_preproc_camcan1.ini │ ├── IBC_preproc_camcan2.ini │ ├── IBC_preproc_clips1.ini │ ├── IBC_preproc_clips2.ini │ ├── IBC_preproc_clips3.ini │ ├── IBC_preproc_clips4.ini │ ├── IBC_preproc_color.ini │ ├── IBC_preproc_dwi.ini │ ├── IBC_preproc_enumeration.ini │ ├── IBC_preproc_fbirn.ini │ ├── IBC_preproc_hcp1.ini │ ├── IBC_preproc_hcp2.ini │ ├── IBC_preproc_leuven.ini │ ├── IBC_preproc_lpp1.ini │ ├── IBC_preproc_lpp2.ini │ ├── IBC_preproc_lyon1.ini │ ├── IBC_preproc_lyon2.ini │ ├── IBC_preproc_mario1.ini │ ├── IBC_preproc_mario2.ini │ ├── IBC_preproc_mathlang.ini │ ├── IBC_preproc_mdtb.ini │ ├── IBC_preproc_monkey_kingdom.ini │ ├── IBC_preproc_mtt1.ini │ ├── IBC_preproc_mtt2.ini │ ├── IBC_preproc_navigation.ini │ ├── IBC_preproc_optimism.ini │ ├── IBC_preproc_preference.ini │ ├── IBC_preproc_preference_sub-11.ini │ ├── IBC_preproc_raiders1.ini │ ├── IBC_preproc_raiders2.ini │ ├── IBC_preproc_retino.ini │ ├── IBC_preproc_reward.ini │ ├── IBC_preproc_rs.ini │ ├── IBC_preproc_rsvp-language.ini │ ├── IBC_preproc_scene.ini │ ├── IBC_preproc_screening.ini │ ├── IBC_preproc_search.ini │ ├── IBC_preproc_self.ini │ ├── IBC_preproc_stanford1.ini │ ├── IBC_preproc_stanford2.ini │ ├── IBC_preproc_stanford3.ini │ ├── IBC_preproc_stanford3_sub-15.ini │ ├── IBC_preproc_tom.ini │ └── IBC_preproc_tom_sub-08.ini ├── make_t1_template.py ├── pipeline.py ├── qmri_README.md ├── qmri_T2star_echo-times.json ├── qmri_run_estimation.py ├── qmri_t1_map_b1.py ├── qmri_t1_map_b1_params.py ├── qmri_t2_map.py ├── script_preferences.py ├── script_resample_normalized_data.py ├── script_retino.py ├── script_skull_stripping.py ├── sin_cos_regressors.csv ├── surface_based_analysis.py ├── surface_glm_only.py └── tract_plot.py └── setup.py /.github/workflows/update_notifier.yml: 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