├── .gitignore ├── .readthedocs.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── cbptools ├── __init__.py ├── _version.py ├── clean.py ├── cluster.py ├── connectivity.py ├── exceptions.py ├── image.py ├── main.py ├── plotting.py ├── project.py ├── schema.yaml ├── tasks │ ├── __init__.py │ ├── clustering.py │ ├── connectivity.py │ ├── masks.py │ ├── plotting.py │ └── validity.py ├── templates │ └── MNI152GM.nii.gz ├── utils.py ├── validation.py └── workflow.py ├── docs ├── Makefile ├── build │ ├── doctrees │ │ ├── environment.pickle │ │ └── index.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _images │ │ └── workflow.png │ │ ├── _sources │ │ └── index.rst.txt │ │ ├── _static │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ └── theme.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── fonts │ │ │ ├── Inconsolata-Bold.ttf │ │ │ ├── Inconsolata-Regular.ttf │ │ │ ├── Inconsolata.ttf │ │ │ ├── Lato-Bold.ttf │ │ │ ├── Lato-Regular.ttf │ │ │ ├── Lato │ │ │ │ ├── lato-bold.eot │ │ │ │ ├── lato-bold.ttf │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-bolditalic.eot │ │ │ │ ├── lato-bolditalic.ttf │ │ │ │ ├── lato-bolditalic.woff │ │ │ │ ├── lato-bolditalic.woff2 │ │ │ │ ├── lato-italic.eot │ │ │ │ ├── lato-italic.ttf │ │ │ │ ├── lato-italic.woff │ │ │ │ ├── lato-italic.woff2 │ │ │ │ ├── lato-regular.eot │ │ │ │ ├── lato-regular.ttf │ │ │ │ ├── lato-regular.woff │ │ │ │ └── lato-regular.woff2 │ │ │ ├── RobotoSlab-Bold.ttf │ │ │ ├── RobotoSlab-Regular.ttf │ │ │ ├── RobotoSlab │ │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ │ └── roboto-slab-v7-regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ └── fontawesome-webfont.woff2 │ │ ├── jquery.js │ │ ├── js │ │ │ ├── modernizr.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ └── underscore.js │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── search.html │ │ └── searchindex.js ├── make.bat ├── requirements.txt └── source │ ├── _static │ ├── median_filtering.png │ ├── relabeling.png │ └── workflow.png │ ├── abbreviations.rst │ ├── conf.py │ ├── configuration │ ├── input_data.rst │ └── parameters.rst │ ├── examples │ ├── cluster_methods.rst │ ├── example_data.rst │ ├── multi_session_data.rst │ └── single_subject_parcellation.rst │ ├── getting_started │ ├── execution.rst │ ├── installation.rst │ ├── setup.rst │ └── validation.rst │ ├── index.rst │ ├── license.rst │ ├── overview │ ├── quickstart.rst │ └── workflow.rst │ ├── processing │ ├── clustering.rst │ ├── connectivity_dmri.rst │ ├── connectivity_rsfmri.rst │ ├── grouping.rst │ ├── masking.rst │ ├── report.rst │ ├── similarity.rst │ └── validity.rst │ ├── references.bib │ └── zbibliography.rst └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/.readthedocs.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/README.md -------------------------------------------------------------------------------- /cbptools/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/__init__.py -------------------------------------------------------------------------------- /cbptools/_version.py: -------------------------------------------------------------------------------- 1 | __version__ = '1.2.0' 2 | -------------------------------------------------------------------------------- /cbptools/clean.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/clean.py -------------------------------------------------------------------------------- /cbptools/cluster.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/cluster.py -------------------------------------------------------------------------------- /cbptools/connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/connectivity.py -------------------------------------------------------------------------------- /cbptools/exceptions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/exceptions.py -------------------------------------------------------------------------------- /cbptools/image.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/image.py -------------------------------------------------------------------------------- /cbptools/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/main.py -------------------------------------------------------------------------------- /cbptools/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/plotting.py -------------------------------------------------------------------------------- /cbptools/project.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/project.py -------------------------------------------------------------------------------- /cbptools/schema.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/schema.yaml -------------------------------------------------------------------------------- /cbptools/tasks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/__init__.py -------------------------------------------------------------------------------- /cbptools/tasks/clustering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/clustering.py -------------------------------------------------------------------------------- /cbptools/tasks/connectivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/connectivity.py -------------------------------------------------------------------------------- /cbptools/tasks/masks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/masks.py -------------------------------------------------------------------------------- /cbptools/tasks/plotting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/plotting.py -------------------------------------------------------------------------------- /cbptools/tasks/validity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/tasks/validity.py -------------------------------------------------------------------------------- /cbptools/templates/MNI152GM.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/templates/MNI152GM.nii.gz -------------------------------------------------------------------------------- /cbptools/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/utils.py -------------------------------------------------------------------------------- /cbptools/validation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/validation.py -------------------------------------------------------------------------------- /cbptools/workflow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/cbptools/workflow.py -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/build/doctrees/environment.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/doctrees/environment.pickle -------------------------------------------------------------------------------- /docs/build/doctrees/index.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/doctrees/index.doctree -------------------------------------------------------------------------------- /docs/build/html/.buildinfo: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/.buildinfo -------------------------------------------------------------------------------- /docs/build/html/_images/workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_images/workflow.png -------------------------------------------------------------------------------- /docs/build/html/_sources/index.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_sources/index.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_static/basic.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/basic.css -------------------------------------------------------------------------------- /docs/build/html/_static/css/badge_only.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/css/badge_only.css -------------------------------------------------------------------------------- /docs/build/html/_static/css/theme.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/css/theme.css -------------------------------------------------------------------------------- /docs/build/html/_static/doctools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/doctools.js -------------------------------------------------------------------------------- /docs/build/html/_static/documentation_options.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/documentation_options.js -------------------------------------------------------------------------------- /docs/build/html/_static/file.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/file.png -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Inconsolata-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Inconsolata-Bold.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Inconsolata-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Inconsolata-Regular.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Inconsolata.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Inconsolata.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato-Bold.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato-Regular.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bold.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bold.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bold.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bold.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bold.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bold.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bold.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bolditalic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bolditalic.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bolditalic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-italic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-italic.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-italic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-italic.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-italic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-italic.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-italic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-italic.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-regular.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-regular.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-regular.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/Lato/lato-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/Lato/lato-regular.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab-Bold.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab-Regular.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/fontawesome-webfont.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/fontawesome-webfont.eot -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/fontawesome-webfont.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/fontawesome-webfont.svg -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/fontawesome-webfont.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/fontawesome-webfont.ttf -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/fontawesome-webfont.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/fontawesome-webfont.woff -------------------------------------------------------------------------------- /docs/build/html/_static/fonts/fontawesome-webfont.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/fonts/fontawesome-webfont.woff2 -------------------------------------------------------------------------------- /docs/build/html/_static/jquery.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/jquery.js -------------------------------------------------------------------------------- /docs/build/html/_static/js/modernizr.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/js/modernizr.min.js -------------------------------------------------------------------------------- /docs/build/html/_static/js/theme.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/js/theme.js -------------------------------------------------------------------------------- /docs/build/html/_static/language_data.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/language_data.js -------------------------------------------------------------------------------- /docs/build/html/_static/minus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/minus.png -------------------------------------------------------------------------------- /docs/build/html/_static/plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/plus.png -------------------------------------------------------------------------------- /docs/build/html/_static/pygments.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/pygments.css -------------------------------------------------------------------------------- /docs/build/html/_static/searchtools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/searchtools.js -------------------------------------------------------------------------------- /docs/build/html/_static/underscore-1.3.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/underscore-1.3.1.js -------------------------------------------------------------------------------- /docs/build/html/_static/underscore.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/_static/underscore.js -------------------------------------------------------------------------------- /docs/build/html/genindex.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/genindex.html -------------------------------------------------------------------------------- /docs/build/html/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/index.html -------------------------------------------------------------------------------- /docs/build/html/objects.inv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/objects.inv -------------------------------------------------------------------------------- /docs/build/html/search.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/search.html -------------------------------------------------------------------------------- /docs/build/html/searchindex.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/build/html/searchindex.js -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/_static/median_filtering.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/_static/median_filtering.png -------------------------------------------------------------------------------- /docs/source/_static/relabeling.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/_static/relabeling.png -------------------------------------------------------------------------------- /docs/source/_static/workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/_static/workflow.png -------------------------------------------------------------------------------- /docs/source/abbreviations.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/abbreviations.rst -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/configuration/input_data.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/configuration/input_data.rst -------------------------------------------------------------------------------- /docs/source/configuration/parameters.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/configuration/parameters.rst -------------------------------------------------------------------------------- /docs/source/examples/cluster_methods.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/examples/cluster_methods.rst -------------------------------------------------------------------------------- /docs/source/examples/example_data.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/examples/example_data.rst -------------------------------------------------------------------------------- /docs/source/examples/multi_session_data.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/examples/multi_session_data.rst -------------------------------------------------------------------------------- /docs/source/examples/single_subject_parcellation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/examples/single_subject_parcellation.rst -------------------------------------------------------------------------------- /docs/source/getting_started/execution.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/getting_started/execution.rst -------------------------------------------------------------------------------- /docs/source/getting_started/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/getting_started/installation.rst -------------------------------------------------------------------------------- /docs/source/getting_started/setup.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/getting_started/setup.rst -------------------------------------------------------------------------------- /docs/source/getting_started/validation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/getting_started/validation.rst -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/license.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/license.rst -------------------------------------------------------------------------------- /docs/source/overview/quickstart.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/overview/quickstart.rst -------------------------------------------------------------------------------- /docs/source/overview/workflow.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/overview/workflow.rst -------------------------------------------------------------------------------- /docs/source/processing/clustering.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/clustering.rst -------------------------------------------------------------------------------- /docs/source/processing/connectivity_dmri.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/connectivity_dmri.rst -------------------------------------------------------------------------------- /docs/source/processing/connectivity_rsfmri.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/connectivity_rsfmri.rst -------------------------------------------------------------------------------- /docs/source/processing/grouping.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/grouping.rst -------------------------------------------------------------------------------- /docs/source/processing/masking.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/masking.rst -------------------------------------------------------------------------------- /docs/source/processing/report.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/report.rst -------------------------------------------------------------------------------- /docs/source/processing/similarity.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/similarity.rst -------------------------------------------------------------------------------- /docs/source/processing/validity.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/processing/validity.rst -------------------------------------------------------------------------------- /docs/source/references.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/references.bib -------------------------------------------------------------------------------- /docs/source/zbibliography.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/docs/source/zbibliography.rst -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/inm7/cbptools/HEAD/setup.py --------------------------------------------------------------------------------