├── .gitignore ├── LICENSE ├── README.md ├── dataloader ├── __init__.py ├── lincs_dl.py └── smiles.py ├── download.py ├── images └── BiAAE.jpg ├── models ├── __init__.py ├── aaes │ ├── biaae.py │ ├── lat_saae.py │ ├── saae.py │ └── uniaae.py └── vaes │ ├── cvae.py │ ├── jmvae.py │ ├── vcca.py │ └── vib.py ├── networks ├── __init__.py ├── decoders.py ├── discriminators.py ├── encoders.py └── tokenizer.py ├── requirements.txt └── training_scripts ├── README.md ├── lincs_experiment.py ├── lincs_experiment_reverse.py ├── mnist_condgen_experiment.py ├── pretrain_mnist_clf.py └── pretrain_rnn_enc_dec.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/insilicomedicine/BiAAE/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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