├── Dockerfile ├── LICENSE.md ├── Makefile ├── README.md ├── environment.yaml ├── example_inputs ├── numbering.npy └── sequences.fasta ├── figures ├── BFN_overview.png ├── cath_s40_proteins.png └── example_protein.png ├── inpaint.py ├── loss.py ├── model.py ├── sample.py └── utils.py /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/LICENSE.md -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/README.md -------------------------------------------------------------------------------- /environment.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/environment.yaml -------------------------------------------------------------------------------- /example_inputs/numbering.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/example_inputs/numbering.npy -------------------------------------------------------------------------------- /example_inputs/sequences.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/example_inputs/sequences.fasta -------------------------------------------------------------------------------- /figures/BFN_overview.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/figures/BFN_overview.png -------------------------------------------------------------------------------- /figures/cath_s40_proteins.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/figures/cath_s40_proteins.png -------------------------------------------------------------------------------- /figures/example_protein.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/figures/example_protein.png -------------------------------------------------------------------------------- /inpaint.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/inpaint.py -------------------------------------------------------------------------------- /loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/loss.py -------------------------------------------------------------------------------- /model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/model.py -------------------------------------------------------------------------------- /sample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/sample.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instadeepai/protein-sequence-bfn/HEAD/utils.py --------------------------------------------------------------------------------