├── .devcontainer └── devcontainer.json ├── .dockerignore ├── .es_version ├── .github ├── actions │ ├── docker-cache │ │ └── action.yml │ ├── gems-cache │ │ └── action.yml │ └── setup-databases │ │ └── action.yml └── workflows │ ├── ci.yml │ ├── next.yml │ └── test.yml ├── .gitignore ├── .rspec ├── .rubocop.yml ├── .rubocop_todo.yml ├── .ruby-version ├── Dockerfile ├── Dockerfile-dev ├── Dockerfile.selenium ├── Gemfile ├── Gemfile.lock ├── INSTALL.md ├── LICENSE ├── README.md ├── Rakefile ├── app ├── assets │ ├── fonts │ │ ├── OpenSans │ │ │ ├── OpenSans-Bold.ttf │ │ │ └── OpenSans-Regular.ttf │ │ └── Roboto │ │ │ ├── LICENSE.txt │ │ │ ├── RobotoMono-Bold.ttf │ │ │ └── RobotoMono-Regular.ttf │ ├── images │ │ ├── .keep │ │ ├── arr-select-down-inv.png │ │ ├── arr-select-down.png │ │ ├── arr-select-right-inv.png │ │ ├── arr-select-up-inv.png │ │ ├── arr-select-up.png │ │ ├── arrow-down.png │ │ ├── arrow-left-white.png │ │ ├── arrow-left.png │ │ ├── arrow-top-header.png │ │ ├── assay-results.png │ │ ├── card-unkown.png │ │ ├── cdp_platform.png │ │ ├── cdx-logo-bw.png │ │ ├── cdx-logo-med.png │ │ ├── cdx-logo.png │ │ ├── checkmark.svg │ │ ├── genexpert.png │ │ ├── ic-cross.png │ │ ├── ic-email-black.png │ │ ├── ic-health-organization.png │ │ ├── ic-institution.png │ │ ├── ic-login.png │ │ ├── ic-manufacturer.png │ │ ├── ic-negative.png │ │ ├── ic-on-off.png │ │ ├── ic-pencil.png │ │ ├── ic-positive.png │ │ ├── ic-search-blue.png │ │ ├── ic-search.png │ │ ├── icons-140x140-black.png │ │ ├── icons-20x20-black.png │ │ ├── icons-20x20-blue.png │ │ ├── icons-20x20-white.png │ │ ├── icons │ │ │ ├── alert.svg │ │ │ ├── algorithm.svg │ │ │ ├── arrow-down.svg │ │ │ ├── arrow-left.svg │ │ │ ├── arrow-right.svg │ │ │ ├── arrow-up.svg │ │ │ ├── as-pdf.svg │ │ │ ├── ascending.svg │ │ │ ├── barchart.svg │ │ │ ├── batch.svg │ │ │ ├── bell.svg │ │ │ ├── break.svg │ │ │ ├── building.svg │ │ │ ├── cartridge.svg │ │ │ ├── check.svg │ │ │ ├── check_circle.svg │ │ │ ├── checkbox-outline.svg │ │ │ ├── checkbox-selected.svg │ │ │ ├── circle-minus-outline.svg │ │ │ ├── circle-minus.svg │ │ │ ├── circle-plus-outline.svg │ │ │ ├── circle-plus.svg │ │ │ ├── close.svg │ │ │ ├── collpase.svg │ │ │ ├── comment.svg │ │ │ ├── copy.svg │ │ │ ├── culture.svg │ │ │ ├── delete-circle.svg │ │ │ ├── descending.svg │ │ │ ├── document.svg │ │ │ ├── download.svg │ │ │ ├── earth.svg │ │ │ ├── ellipsis.svg │ │ │ ├── error.svg │ │ │ ├── ethernet.svg │ │ │ ├── expand.svg │ │ │ ├── eye.svg │ │ │ ├── forward.svg │ │ │ ├── help.svg │ │ │ ├── horizontal-thumb-fill.svg │ │ │ ├── horizontal-thumb-outline.svg │ │ │ ├── info-outline.svg │ │ │ ├── info.svg │ │ │ ├── ink-dropper.svg │ │ │ ├── key.svg │ │ │ ├── keyboard-arrow-down.svg │ │ │ ├── keyboard-arrow-left.svg │ │ │ ├── keyboard-arrow-right.svg │ │ │ ├── keyboard-arrow-up.svg │ │ │ ├── link.svg │ │ │ ├── local_shipping.svg │ │ │ ├── location.svg │ │ │ ├── lock.svg │ │ │ ├── mail.svg │ │ │ ├── map.svg │ │ │ ├── mask.svg │ │ │ ├── microscope.svg │ │ │ ├── notification.svg │ │ │ ├── outline-alert.svg │ │ │ ├── outline-algorithm.svg │ │ │ ├── outline-box.svg │ │ │ ├── outline-category.svg │ │ │ ├── outline-device.svg │ │ │ ├── outline-email.svg │ │ │ ├── outline-female-avatar.svg │ │ │ ├── outline-instructions.svg │ │ │ ├── outline-lock.svg │ │ │ ├── outline-male-avatar.svg │ │ │ ├── outline-patient.svg │ │ │ ├── outline-picture.svg │ │ │ ├── outline-report.svg │ │ │ ├── outline-role.svg │ │ │ ├── outline-search.svg │ │ │ ├── outline-sharing-request.svg │ │ │ ├── outline-site.svg │ │ │ ├── outline-test.svg │ │ │ ├── outline-user.svg │ │ │ ├── patient.svg │ │ │ ├── pencil.svg │ │ │ ├── plus.svg │ │ │ ├── power.svg │ │ │ ├── print.svg │ │ │ ├── punchcard.svg │ │ │ ├── radio-button-outline.svg │ │ │ ├── radio-button-selected.svg │ │ │ ├── refresh.svg │ │ │ ├── search.svg │ │ │ ├── send.svg │ │ │ ├── strip.svg │ │ │ ├── table.svg │ │ │ ├── tag.svg │ │ │ ├── test-tube.svg │ │ │ ├── test.svg │ │ │ ├── tick.svg │ │ │ ├── time-span.svg │ │ │ ├── transfer.svg │ │ │ ├── trash.svg │ │ │ ├── trend.svg │ │ │ ├── update.svg │ │ │ ├── upload.svg │ │ │ ├── user.svg │ │ │ ├── visibility_off.svg │ │ │ ├── wrap.svg │ │ │ └── wrench.svg │ │ └── user-invite.png │ ├── javascripts │ │ ├── actions │ │ │ └── AlertActions.js.jsx │ │ ├── application.js │ │ ├── box_selector.js.jsx │ │ ├── components.js │ │ ├── components │ │ │ ├── .gitkeep │ │ │ ├── add_item_search.js.jsx │ │ │ ├── address.js.jsx │ │ │ ├── address_autosuggest.js.jsx │ │ │ ├── admin_invite_form.js.jsx │ │ │ ├── alert_aggregation.js.jsx │ │ │ ├── alert_category_select.js.jsx │ │ │ ├── alert_child_components.js.jsx │ │ │ ├── alert_conditions.js.jsx │ │ │ ├── alert_external_users.js.jsx │ │ │ ├── alert_incidents.js.jsx │ │ │ ├── alert_utilization_efficiency.js.jsx │ │ │ ├── bar_chart.js.jsx │ │ │ ├── box_batches_form.js.jsx │ │ │ ├── cdx_select.js.jsx │ │ │ ├── cdx_select_autocomplete.js.jsx │ │ │ ├── cdx_select_section_toggler.js.jsx │ │ │ ├── confirmation_modal.js.jsx │ │ │ ├── device_setup.js.jsx │ │ │ ├── encounter_form.js.jsx │ │ │ ├── encounter_new.js.jsx │ │ │ ├── encounter_show.js.jsx │ │ │ ├── flash_error_messages.js.jsx │ │ │ ├── fresh_tests_encounter_form.js.jsx │ │ │ ├── institution_invite_form.js.jsx │ │ │ ├── institution_invite_presenter.js.jsx │ │ │ ├── layout.js.jsx │ │ │ ├── location_label.js.jsx │ │ │ ├── location_select.js.jsx │ │ │ ├── modal.js.jsx.erb │ │ │ ├── navigation_context_picker.js.jsx │ │ │ ├── non_editable_map.js.jsx │ │ │ ├── option_list.js.jsx.erb │ │ │ ├── pager.js.jsx │ │ │ ├── patient_card.js.jsx.erb │ │ │ ├── patient_select.js.jsx │ │ │ ├── pie_chart.js.jsx │ │ │ ├── policy_definition.js.jsx │ │ │ ├── policy_definition_field.js.jsx │ │ │ ├── policy_item.js.jsx.erb │ │ │ ├── policy_item_detail.js.jsx │ │ │ ├── resource_list.js.jsx │ │ │ ├── sample.js.jsx │ │ │ ├── samples_reports_bar_chart.js.jsx │ │ │ ├── samples_reports_line_chart.js.jsx │ │ │ ├── samples_reports_roc_chart.js.jsx │ │ │ ├── samples_selector.js.jsx │ │ │ ├── site_select.js.jsx │ │ │ ├── sites.js.jsx │ │ │ ├── sortable_column_header.js.jsx │ │ │ ├── test_orders_list.js.jsx │ │ │ ├── test_result.js.jsx │ │ │ ├── test_results_list.js.jsx │ │ │ ├── upload_csv_box.js.jsx │ │ │ ├── user_institution_invite.js.jsx │ │ │ ├── user_invite_form.js.jsx │ │ │ └── users.js.jsx │ │ ├── device_model.js │ │ ├── liga.js │ │ ├── playground.js │ │ ├── polyfills.js │ │ ├── random_key.js │ │ ├── simulator.js │ │ ├── site.js │ │ ├── stores │ │ │ └── AlertStore.js.jsx │ │ └── styled_confirmation.js │ └── stylesheets │ │ ├── _alert.scss │ │ ├── _barby.scss │ │ ├── _barcode_card.scss │ │ ├── _batches.scss │ │ ├── _box_preview.scss │ │ ├── _buttons.scss │ │ ├── _card.scss │ │ ├── _charts.scss │ │ ├── _components.scss │ │ ├── _errors.scss │ │ ├── _forms.scss │ │ ├── _global.scss │ │ ├── _grid.scss │ │ ├── _icons.scss │ │ ├── _layout.scss │ │ ├── _leaflet-control-geocoder.scss │ │ ├── _mixins.scss │ │ ├── _notes.scss │ │ ├── _react-select.scss │ │ ├── _reset.scss │ │ ├── _sample_assays.scss │ │ ├── _sample_transfer_modal.scss │ │ ├── _samples_report.scss │ │ ├── _selector_list.scss │ │ ├── _tables.scss │ │ ├── _tabs.scss │ │ ├── _transfer_packages.scss │ │ ├── _user_institution_invites_modal.scss │ │ ├── _variables.scss │ │ ├── application.scss │ │ └── mailer.scss ├── controllers │ ├── alert_messages_controller.rb │ ├── alerts_controller.rb │ ├── api │ │ ├── activations_controller.rb │ │ ├── encounters_controller.rb │ │ ├── filters_controller.rb │ │ ├── institutions_controller.rb │ │ ├── messages_controller.rb │ │ ├── playground_controller.rb │ │ ├── sites_controller.rb │ │ ├── subscribers_controller.rb │ │ └── tests_controller.rb │ ├── api_controller.rb │ ├── api_tokens_controller.rb │ ├── application_controller.rb │ ├── assay_files_controller.rb │ ├── autocompletes_controller.rb │ ├── batches_controller.rb │ ├── boxes_controller.rb │ ├── concerns │ │ ├── .keep │ │ ├── subscribers_controller.rb │ │ └── view_helper.rb │ ├── dashboards_controller.rb │ ├── device_commands_controller.rb │ ├── device_logs_controller.rb │ ├── device_messages_controller.rb │ ├── device_models_controller.rb │ ├── devices_controller.rb │ ├── encounters_controller.rb │ ├── filters_controller.rb │ ├── home_controller.rb │ ├── incidents_controller.rb │ ├── institutions_controller.rb │ ├── locations_controller.rb │ ├── loinc_codes_controller.rb │ ├── nih_tables_controller.rb │ ├── omniauth_callbacks_controller.rb │ ├── patients_controller.rb │ ├── policies_controller.rb │ ├── qc_infos_controller.rb │ ├── registrations_controller.rb │ ├── roles_controller.rb │ ├── samples_controller.rb │ ├── samples_reports_controller.rb │ ├── sessions_controller.rb │ ├── sites_controller.rb │ ├── subscribers_controller.rb │ ├── test_results_controller.rb │ ├── transfer_packages_controller.rb │ ├── users │ │ └── invitations_controller.rb │ └── users_controller.rb ├── documents │ ├── base_pdf.rb │ ├── box_label_pdf.rb │ ├── label_pdf.rb │ ├── nih_report.rb │ ├── sample_label_pdf.rb │ └── samples_label_pdf.rb ├── helpers │ ├── activations_helper.rb │ ├── alerts_helper.rb │ ├── application_helper.rb │ ├── autocomplete_field_helper.rb │ ├── barcode_helper.rb │ ├── cdx_form_helper.rb │ ├── charts_helper.rb │ ├── confirmation_helper.rb │ ├── custom_mappings_helper.rb │ ├── device_models_helper.rb │ ├── icon_helper.rb │ ├── mailer_helper.rb │ ├── map_helper.rb │ ├── paging_helper.rb │ ├── patients_helper.rb │ ├── playground_helper.rb │ ├── roles_helper.rb │ ├── sample_helper.rb │ ├── samples_reports_helper.rb │ ├── sites_helper.rb │ └── users_helper.rb ├── jobs │ ├── alert_job.rb │ ├── application_job.rb │ ├── daily_alert_job.rb │ ├── daily_demo_data.rb │ ├── demo_data │ │ └── manifests_demo_template │ │ │ ├── cepheid.json │ │ │ └── fio.xml │ ├── hourly_alert_job.rb │ ├── hourly_utilization_efficiency_job.rb │ ├── monthly_alert_job.rb │ ├── notify_subscriber_job.rb │ ├── sentry_jobs.rb │ └── weekly_alert_job.rb ├── mailers │ ├── .keep │ ├── alert_mailer.rb │ ├── application_mailer.rb │ ├── device_mailer.rb │ └── invitation_mailer.rb ├── models │ ├── alert.rb │ ├── alert_condition_result.rb │ ├── alert_history.rb │ ├── alert_recipient.rb │ ├── application_record.rb │ ├── assay_attachment.rb │ ├── assay_file.rb │ ├── batch.rb │ ├── batch_form.rb │ ├── blender.rb │ ├── box.rb │ ├── box_form.rb │ ├── box_transfer.rb │ ├── computed_policy.rb │ ├── computed_policy_exception.rb │ ├── concerns │ │ ├── auto_id_hash.rb │ │ ├── auto_uuid.rb │ │ ├── computed_policy_concern.rb │ │ ├── core_entity_id.rb │ │ ├── date_produced.rb │ │ ├── entity.rb │ │ ├── inactivation_method.rb │ │ ├── resource.rb │ │ ├── site_contained.rb │ │ ├── specimen_role.rb │ │ └── with_location.rb │ ├── condition.rb │ ├── config │ │ └── specimen_roles.yml │ ├── core_manifest_field.rb │ ├── csv_builder.rb │ ├── csv_message_parser.rb │ ├── custom_manifest_field.rb │ ├── date_distance_helper.rb │ ├── device.rb │ ├── device_command.rb │ ├── device_log.rb │ ├── device_message.rb │ ├── device_message_importer.rb │ ├── device_message_processor.rb │ ├── device_model.rb │ ├── encounter.rb │ ├── encounter_indexer.rb │ ├── encounter_query.rb │ ├── encounters_schema.rb │ ├── entity_csv_builder.rb │ ├── entity_index_updater.rb │ ├── entity_indexable_fields.rb │ ├── entity_indexer.rb │ ├── entity_query.rb │ ├── entity_schema.rb │ ├── file_message.rb │ ├── filter.rb │ ├── ftp_info.rb │ ├── ftp_monitor.rb │ ├── headless_csv_message_parser.rb │ ├── identity.rb │ ├── institution.rb │ ├── json_message_parser.rb │ ├── localization_helper.rb │ ├── location.rb │ ├── loinc_code.rb │ ├── manifest.rb │ ├── manifest_field.rb │ ├── manifest_field_mapping.rb │ ├── manifest_field_validation.rb │ ├── message_encryption.rb │ ├── navigation_context.rb │ ├── note.rb │ ├── patient.rb │ ├── patient_form.rb │ ├── pending_institution_invite.rb │ ├── policy.rb │ ├── qc_info.rb │ ├── recipient_notification_history.rb │ ├── role.rb │ ├── sample.rb │ ├── sample_form.rb │ ├── sample_identifier.rb │ ├── samples_report.rb │ ├── samples_report_sample.rb │ ├── site.rb │ ├── ssh_key.rb │ ├── subscriber.rb │ ├── sync_helpers.rb │ ├── test_result.rb │ ├── test_result_indexer.rb │ ├── test_result_parsed_datum.rb │ ├── test_result_query.rb │ ├── tests_schema.rb │ ├── transfer_package.rb │ ├── user.rb │ ├── xml_message_parser.rb │ ├── xml_message_serializer.rb │ └── zip_serialize.rb ├── policies │ ├── implicit.json.erb │ ├── owner │ │ ├── health_organization.json.erb │ │ ├── institution.json.erb │ │ └── manufacturer.json.erb │ ├── roles │ │ ├── institution │ │ │ ├── health_organization.json.erb │ │ │ ├── institution.json.erb │ │ │ └── manufacturer.json.erb │ │ └── site │ │ │ ├── health_organization.json.erb │ │ │ ├── institution.json.erb │ │ │ └── manufacturer.json.erb │ └── superadmin.json.erb ├── presenters │ ├── sample_presenter.rb │ └── transfer_package_presenter.rb └── views │ ├── alert_mailer │ ├── alert_email.html.haml │ └── alert_email.text.haml │ ├── alert_messages │ └── index.html.haml │ ├── alerts │ ├── _filters.html.haml │ ├── edit.html.haml │ ├── index.html.haml │ └── new.html.haml │ ├── api │ ├── encounters │ │ └── index.csv.csvbuilder │ ├── institutions │ │ └── index.csv.csvbuilder │ ├── playground │ │ ├── index.haml │ │ └── simulator.haml │ ├── sites │ │ └── index.csv.csvbuilder │ └── tests │ │ └── index.csv.csvbuilder │ ├── api_tokens │ └── index.html.haml │ ├── batches │ ├── _filters.haml │ ├── _form.haml │ ├── _index_js.haml │ ├── _samples.haml │ ├── _samples_bulk_js.haml │ ├── _samples_js.haml │ ├── _show_samples.haml │ ├── autocomplete.json.jbuilder │ ├── edit.haml │ ├── index.haml │ └── new.haml │ ├── boxes │ ├── _barcode_card.haml │ ├── _filters.haml │ ├── _form.haml │ ├── _preview.haml │ ├── _preview_for_report.haml │ ├── edit.haml │ ├── index.haml │ ├── inventory.csv.csvbuilder │ ├── new.haml │ ├── show.haml │ └── validate.json.jbuilder │ ├── components │ ├── _card.html.haml │ ├── _cdx_select.html.haml │ ├── _cdx_table.html.haml │ ├── _cdx_tabs.html.haml │ ├── _cdx_tabs_header.html.haml │ ├── _empty_data.html.haml │ ├── _location_select.html.haml │ └── _setting_card.html.haml │ ├── dashboards │ ├── index.html.haml │ └── nndd.haml │ ├── device_logs │ └── index.haml │ ├── device_mailer │ └── setup_instructions.html.haml │ ├── device_messages │ ├── _filters.haml │ └── index.haml │ ├── device_models │ ├── _form.haml │ ├── _publish.haml │ ├── edit.haml │ ├── index.haml │ ├── new.haml │ ├── show.haml │ └── show.json.jbuilder │ ├── devices │ ├── _activation_token.haml │ ├── _custom_mappings.haml │ ├── _device_card.haml │ ├── _filters.haml │ ├── _form.haml │ ├── _secret_key.haml │ ├── edit.haml │ ├── generate_activation_token.js.erb │ ├── index.csv.csvbuilder │ ├── index.haml │ ├── index.json.jbuilder │ ├── logs.haml │ ├── new.haml │ ├── performance.haml │ ├── regenerate_key.js.erb │ ├── setup.haml │ ├── show.haml │ └── token.haml │ ├── devise │ ├── confirmations │ │ └── new.html.haml │ ├── mailer │ │ ├── confirmation_instructions.html.haml │ │ ├── reset_password_instructions.html.erb │ │ └── unlock_instructions.html.erb │ ├── passwords │ │ ├── edit.html.haml │ │ └── new.html.haml │ ├── registrations │ │ ├── edit.html.haml │ │ └── new.html.haml │ ├── sessions │ │ └── new.html.haml │ ├── shared │ │ └── _links.html.erb │ └── unlocks │ │ └── new.html.haml │ ├── encounters │ ├── edit.html.haml │ ├── new.html.haml │ ├── new_index.html.haml │ └── show.html.haml │ ├── filters │ ├── _form.haml │ ├── edit.html.haml │ ├── index.html.haml │ └── new.haml │ ├── form_builder │ ├── _field.haml │ ├── _field_errors.haml │ ├── _form_actions.haml │ └── _form_errors.haml │ ├── home │ ├── design.haml │ ├── index.haml │ ├── join.haml │ ├── settings.html.haml │ └── verify.haml │ ├── incidents │ ├── _filters.html.haml │ └── index.html.haml │ ├── institutions │ ├── _form.haml │ ├── edit.haml │ ├── index.haml │ ├── index.json.jbuilder │ ├── new.haml │ ├── no_data_allowed.haml │ └── pending_approval.haml │ ├── invitation_mailer │ ├── create_institution_message.html.erb │ ├── invite_institution_message.html.erb │ └── invite_message.html.erb │ ├── layouts │ ├── application.html.haml │ ├── clean.haml │ ├── devise.haml │ ├── mailer.html.haml │ ├── mailer.text.haml │ └── messages.haml │ ├── locations │ ├── index.html.haml │ ├── index.json.jbuilder │ ├── show.html.haml │ └── show.json.jbuilder │ ├── nih_tables │ ├── nih_batches.csvbuilder │ ├── nih_challenge.csv.csvbuilder │ ├── nih_lod.csv.csvbuilder │ ├── nih_results.csv.csvbuilder │ └── nih_samples.csv.csvbuilder │ ├── patients │ ├── _filters.haml │ ├── _form.html.haml │ ├── edit.html.haml │ ├── index.html.haml │ ├── new.html.haml │ └── show.html.haml │ ├── policies │ ├── _form.html.haml │ ├── edit.html.haml │ ├── index.haml │ └── new.html.haml │ ├── qc_infos │ ├── _form.haml │ ├── _show_assays.haml │ ├── _show_notes.haml │ └── edit.haml │ ├── roles │ ├── _filters.haml │ ├── _form.html.haml │ ├── edit.haml │ ├── index.haml │ └── new.haml │ ├── samples │ ├── _barcode_card.haml │ ├── _filters.haml │ ├── _form.haml │ ├── _form_assays.haml │ ├── _form_assays_js.haml │ ├── _form_notes.haml │ ├── _form_notes_js.haml │ ├── _index_bulk_actions_js.haml │ ├── _index_js.haml │ ├── _preview.haml │ ├── _show_assays.haml │ ├── _show_notes.haml │ ├── _upload_results_js.haml │ ├── autocomplete.json.jbuilder │ ├── edit.haml │ ├── index.haml │ ├── new.haml │ └── upload_results.haml │ ├── samples_reports │ ├── _confusion_matrix.haml │ ├── _filters.haml │ ├── _form.haml │ ├── index.haml │ ├── new.haml │ └── show.haml │ ├── shared │ ├── _footer.haml │ ├── _header_nav.haml │ ├── _list.haml │ ├── _pagination.html.haml │ └── _validation_errors.html.haml │ ├── sites │ ├── _filters.haml │ ├── _form.html.haml │ ├── _show.html.haml │ ├── _side.html.haml │ ├── devices.html.haml │ ├── edit.html.haml │ ├── index.html.haml │ ├── index.json.jbuilder │ └── new.html.haml │ ├── subscribers │ ├── _form.html.haml │ ├── edit.html.haml │ ├── index.html.haml │ └── new.html.haml │ ├── test_results │ ├── _filters.haml │ ├── index.haml │ └── show.haml │ ├── transfer_packages │ ├── _filters.haml │ ├── _form.haml │ ├── index.haml │ ├── new.haml │ └── show.haml │ └── users │ ├── _form.html.haml │ ├── edit.html.haml │ ├── index.haml │ ├── invitations │ ├── edit.html.haml │ └── new.html.erb │ └── no_data_allowed.haml ├── bin ├── bundle ├── rails ├── setup ├── spring └── update ├── cdx-api-elasticsearch.gemspec ├── cdx.gemspec ├── config.ru ├── config ├── application.rb ├── boot.rb ├── cucumber.yml ├── database.yml ├── environment.rb ├── environments │ ├── development.rb │ ├── production.rb │ └── test.rb ├── initializers │ ├── activerecord.rb │ ├── application_controller_renderer.rb │ ├── assets.rb │ ├── backports.rb │ ├── backtrace_silencers.rb │ ├── cdx.rb │ ├── config.rb │ ├── cookies_serializer.rb │ ├── devise.rb │ ├── doorkeeper.rb │ ├── filter_parameter_logging.rb │ ├── hash.rb │ ├── inflections.rb │ ├── libs.rb │ ├── location_service.rb │ ├── manifest_parsing_error.rb │ ├── mime_types.rb │ ├── object.rb │ ├── oj.rb │ ├── paperclip_defaults.rb │ ├── recaptcha.rb │ ├── sentry.rb │ ├── session_store.rb │ ├── string.rb │ ├── sync.rb │ ├── tempfile_reaper.rb │ ├── version.rb │ └── wrap_parameters.rb ├── locales │ ├── devise.en.yml │ ├── devise.security_extension.de.yml │ ├── devise.security_extension.en.yml │ ├── devise_invitable.en.yml │ ├── doorkeeper.en.yml │ └── en.yml ├── puma.rb ├── routes.rb ├── schedule.rb ├── secrets.yml ├── settings.yml ├── settings │ ├── development.yml │ ├── production.yml │ └── test.yml └── spring.rb ├── db ├── migrate │ ├── 20140203233601_create_work_groups.rb │ ├── 20140203234249_devise_create_users.rb │ ├── 20140203234745_create_facilities.rb │ ├── 20140204134837_create_subscribers.rb │ ├── 20140312115721_delete_facilities_index_name.rb │ ├── 20140312144328_add_auth_token_to_subscribers.rb │ ├── 20140325195841_rename_facility_to_device.rb │ ├── 20140326151525_create_reports.rb │ ├── 20140326191422_add_secret_key_to_devices.rb │ ├── 20140404152310_create_laboratories.rb │ ├── 20140404152558_rename_work_group_to_institution.rb │ ├── 20140404172012_rename_reports_to_test_results.rb │ ├── 20140407154134_remove_institution_id_from_test_results.rb │ ├── 20140407184142_create_locations.rb │ ├── 20140415190208_create_identities.rb │ ├── 20140422171811_add_sensitive_data_to_test_results.rb │ ├── 20140423133302_rolify_create_roles.rb │ ├── 20140425152014_add_institution_id_to_devices.rb │ ├── 20140428143812_add_devices_laboratories.rb │ ├── 20140505145148_add_uuid_to_test_results.rb │ ├── 20140515170318_create_device_models.rb │ ├── 20140515171158_create_manifests.rb │ ├── 20140521153536_delete_subscribers.rb │ ├── 20140521153720_create_new_subscribers.rb │ ├── 20140521194129_add_url_user_and_url_password_to_subscribers.rb │ ├── 20140522180707_add_custom_fields_to_test_result.rb │ ├── 20140526174156_delete_rolify.rb │ ├── 20140526181013_create_policies.rb │ ├── 20140526190412_add_name_to_policies.rb │ ├── 20140530205604_add_event_id_to_test_results.rb │ ├── 20140603191744_rename_test_result_to_event.rb │ ├── 20140722154526_add_admin_level_to_locations.rb │ ├── 20140805151606_add_api_version_to_manifests.rb │ ├── 20140821200906_add_failed_to_events.rb │ ├── 20140822151308_rename_failed_events_column.rb │ ├── 20140822152516_add_index_failure_reason_to_events.rb │ ├── 20140822165416_change_index_failure_reason_events_column_to_text.rb │ ├── 20140918175424_change_manifest_version_from_integer_to_string.rb │ ├── 20140925185610_add_geo_id_to_locations.rb │ ├── 20141218155918_create_ssh_keys.rb │ ├── 20150119150526_create_activation_tokens.rb │ ├── 20150119150757_create_activations.rb │ ├── 20150119154001_add_index_to_activation_token_value.rb │ ├── 20150119172327_make_activation_index_unique.rb │ ├── 20150120144346_rename_device_secret_key_to_client_id.rb │ ├── 20150202182319_create_filters.rb │ ├── 20150202182842_add_filter_id_to_subscriber.rb │ ├── 20150202182945_migrate_subscriber_filters.rb │ ├── 20150202184854_remove_filter_from_subscriber.rb │ ├── 20150204181542_rename_filter_params_as_query.rb │ ├── 20150206142251_add_uuid_to_devices.rb │ ├── 20150223145645_create_samples.rb │ ├── 20150223151051_add_sample_to_events.rb │ ├── 20150223151900_remove_sensitive_data_from_events.rb │ ├── 20150224154748_add_verb_to_subscribers.rb │ ├── 20150225160228_add_institution_to_samples.rb │ ├── 20150227193433_create_device_events.rb │ ├── 20150227193601_remove_raw_data_from_events.rb │ ├── 20150302142243_create_device_events_events.rb │ ├── 20150304194308_add_sensitive_fields_to_events.rb │ ├── 20150304200858_add_custom_fields_to_samples.rb │ ├── 20150304202928_add_sample_uid_hash_to_samples.rb │ ├── 20150304203611_remove_sample_id_from_samples.rb │ ├── 20150304203629_add_indices_to_samples.rb │ ├── 20150305145336_add_indexed_fields_to_samples.rb │ ├── 20150305153907_add_indices_to_events.rb │ ├── 20150305175247_add_device_id_to_events.rb │ ├── 20150415173132_change_laboratory_location_id_to_geo_id.rb │ ├── 20150415173303_drop_locations_table.rb │ ├── 20150422124002_add_timestamps_to_samples.rb │ ├── 20150508170417_add_time_zone_to_devices.rb │ ├── 20150513175833_add_index_failure_data_to_device_events.rb │ ├── 20150522173544_create_patients.rb │ ├── 20150522180205_add_patient_id_to_samples.rb │ ├── 20150526153400_add_patient_id_to_events.rb │ ├── 20150527160209_add_indexed_fields_to_events.rb │ ├── 20150601165237_rename_events_to_test_results.rb │ ├── 20150601165245_rename_device_events_events_to_device_events_test_results.rb │ ├── 20150601165607_rename_event_id_column_in_device_events_test_results.rb │ ├── 20150601165748_rename_event_id_column_in_test_results.rb │ ├── 20150604132737_rename_secret_key_to_secret_key_hash_in_devices.rb │ ├── 20150604132909_migrate_secret_key_to_secret_key_hash_in_devices.rb │ ├── 20150608182645_rename_device_events_to_device_messages.rb │ ├── 20150608182743_rename_device_events_test_results_to_device_messages_test_results.rb │ ├── 20150608182846_rename_device_event_id_column_in_device_messages_test_results.rb │ ├── 20150624170646_add_custom_mappings_to_devices.rb │ ├── 20150724145211_create_conditions.rb │ ├── 20150728150405_create_encounters.rb │ ├── 20150805180134_use_entity_uid_hash.rb │ ├── 20150805185341_rename_indexed_fields_to_core_fields.rb │ ├── 20150812153349_remove_location_from_policies.rb │ ├── 20150812203030_update_filter_query_parameters.rb │ ├── 20150818200013_add_uuid_to_institutions_and_laboratories.rb │ ├── 20150821200128_set_uuid_for_institutions_and_laboratories.rb │ ├── 20150825150412_add_laboratory_id_to_devices.rb │ ├── 20150901163906_rename.rb │ ├── 20150902154438_add_serial_number_to_devices.rb │ ├── 20150915164518_remove_device_models_manifests.rb │ ├── 20150917174426_create_computed_policies.rb │ ├── 20150921222526_add_delegable_to_computed_policies.rb │ ├── 20150922185638_create_computed_policy_exceptions.rb │ ├── 20150922204816_drop_allow_column_from_computed_policies.rb │ ├── 20150925172725_create_device_logs.rb │ ├── 20150925175941_replace_entity_id_hash_with_entity_id_in_samples.rb │ ├── 20150925180545_fill_entity_id_in_samples.rb │ ├── 20150928142745_add_password_changed_at_to_user.rb │ ├── 20150928183528_add_institution_id_to_device_models.rb │ ├── 20150928201723_create_device_commands.rb │ ├── 20150929100922_create_old_passwords.rb │ ├── 20150929202058_add_not_available_serial_number_to_existing_devices.rb │ ├── 20150930130533_add_condition_device_id_to_computed_policies.rb │ ├── 20151005141913_remove_delegable_from_policies.rb │ ├── 20151005172622_add_kind_to_institutions.rb │ ├── 20151006141255_add_laboratory_and_institution_ids_to_test_results.rb │ ├── 20151006141537_set_laboratory_and_instititution_ids_defaults.rb │ ├── 20151006145712_add_published_at_to_device_models.rb │ ├── 20151008162340_rename_laboratory_to_site.rb │ ├── 20151008205841_add_supports_activation_to_device_model.rb │ ├── 20151013215720_add_locale_to_users.rb │ ├── 20151015221802_add_timestamps_in_device_time_zone_to_users.rb │ ├── 20151016143640_add_time_zone_to_users.rb │ ├── 20151019174509_create_sample_identifiers.rb │ ├── 20151019202219_add_parent_id_and_prefix_to_sites.rb │ ├── 20151020173442_change_resource_id_and_condition_site_id_to_string_in_computed_policies.rb │ ├── 20151026185300_change_resource_id_and_condition_site_id_to_string_in_computed_policy_exceptions.rb │ ├── 20151026193558_add_site_prefix_to_devices_and_test_results.rb │ ├── 20151027172759_create_doorkeeper_tables.rb │ ├── 20151027175111_add_owner_to_application.rb │ ├── 20151029165435_add_support_url_to_device_models.rb │ ├── 20151029184400_add_attachment_picture_to_device_models.rb │ ├── 20151030120316_add_names_to_user.rb │ ├── 20151030211740_rename_entity_id_hash_to_entity_id_in_encounters.rb │ ├── 20151102104047_devise_invitable_add_to_users.rb │ ├── 20151103193538_add_sample_id_reset_policy_to_sites.rb │ ├── 20151104202638_create_test_result_parsed_data.rb │ ├── 20151105211638_add_phantom_flag_to_entities.rb │ ├── 20151110161047_add_deleted_at_to_sites.rb │ ├── 20151116133521_drop_samples_duplicate_index.rb │ ├── 20151116134931_add_site_id_to_sample_identifiers.rb │ ├── 20151118155324_add_deleted_at_to_entities.rb │ ├── 20151119133838_rename_encounter_assay_to_diagnosis.rb │ ├── 20151120181949_add_last_navigation_context_to_users.rb │ ├── 20151123180754_add_attachment_setup_instructions_to_device_models.rb │ ├── 20151123201511_move_activation_tokens_to_devices.rb │ ├── 20151124172252_create_alerts.rb │ ├── 20151125151833_create_roles.rb │ ├── 20151130130846_add_main_phone_number_and_email_address_to_sites.rb │ ├── 20151201150151_add_is_active_flag_to_user.rb │ ├── 20151202174956_add_site_to_encounters.rb │ ├── 20151204105403_add_telephone_to_users.rb │ ├── 20151207120355_add_category_to_alerts.rb │ ├── 20151208152927_add_query_to_alert.rb │ ├── 20151209120802_create_alert_histories.rb │ ├── 20151209165717_add_message_to_alerts.rb │ ├── 20151209174256_create_alert_recipients.rb │ ├── 20151210114431_add_channel_type_to_alerts.rb │ ├── 20151210132301_add_email_to_alert_recipients.rb │ ├── 20151210144138_add_sample_identifier_generation_to_sites.rb │ ├── 20151210181714_add_key_to_roles.rb │ ├── 20151210184357_add_timestamps_to_sample_identifiers.rb │ ├── 20151214171318_add_site_to_alert.rb │ ├── 20151215172107_add.rb │ ├── 20151215172425_add_roles_to_alert_recipients.rb │ ├── 20151216095841_add_aggregation_frequency_to_alerts.rb │ ├── 20151216102356_add_sms_limit_to_alerts.rb │ ├── 20151216135042_create_recipient_notification_histories.rb │ ├── 20151216150910_add_for_aggregation_calculation_to_alert_history.rb │ ├── 20151218123655_add_user_updated_at_to_encounters.rb │ ├── 20151218172251_create_join_table_alert_device.rb │ ├── 20151221103428_remove_site_id_from_alerts.rb │ ├── 20151221105129_create_join_table_alert_site.rb │ ├── 20160104104519_add_anomalie_type_to_alerts.rb │ ├── 20160105165742_add_location_to_patients.rb │ ├── 20160106154918_add_notifty_patients_to_alerts.rb │ ├── 20160108181427_add_name_to_patients.rb │ ├── 20160108194936_add_entity_id_to_patients.rb │ ├── 20160112190503_add_site_prefix_to_encounters.rb │ ├── 20160113171706_add_recipient_type_to_alert_recipients.rb │ ├── 20160114154732_add_start_time_to_encounters.rb │ ├── 20160115131955_add_site_id_site_prefix_to_patients.rb │ ├── 20160115135130_add_sms_message_to_alerts.rb │ ├── 20160120213220_create_file_messages.rb │ ├── 20160120214128_add_ftp_info_to_devices.rb │ ├── 20160120214202_add_ftp_flag_to_device_models.rb │ ├── 20160125112341_add_sms_to_recipient_notification_histories.rb │ ├── 20160125134622_add_filename_pattern_to_device_models.rb │ ├── 20160128123511_add_deleted_at_to_alerts.rb │ ├── 20160203094023_create_join_table_alert_condition.rb │ ├── 20160203095033_create_alert_condition_results.rb │ ├── 20160203103630_add_alert_to_alert_condition_results.rb │ ├── 20160203150350_add_threshold_to_alerts.rb │ ├── 20160203230132_add_include_subsites_to_computed_policies.rb │ ├── 20160204091551_add_aggregation_threshold_to_alerts.rb │ ├── 20160205154644_add_sample_id_to_alerts.rb │ ├── 20160210163103_add_utilization_efficiency_to_alerts.rb │ ├── 20160210191011_add_site_id_to_device_message.rb │ ├── 20160210193741_set_site_id_in_device_messages.rb │ ├── 20160215195614_add_deleted_at_to_devices.rb │ ├── 20160218104352_add_email_limit_to_alerts.rb │ ├── 20160223111818_add_deleted_at_to_alert_recipients.rb │ ├── 20160301180433_add_site_prefix_to_role.rb │ ├── 20160307144244_add_use_aggregation_percentage_to_alerts.rb │ ├── 20160308134157_add_institution_to_alerts.rb │ ├── 20160309161106_add_time_last_aggregation_checked_to_alerts.rb │ ├── 20160310151033_add_test_result_updated_at_to_alert_histories.rb │ ├── 20160317204732_add_ftp_passive_to_devices.rb │ ├── 20160318120245_add_ftp_passive_to_file_messages.rb │ ├── 20160322190646_add_sidebar_open_to_users.rb │ ├── 20160405192357_add_allows_manual_entry_to_site.rb │ ├── 20210424172045_create_laboratory_samples.rb │ ├── 20210425195132_add_type_to_laboratory_samples.rb │ ├── 20210505201523_add_institution_to_laboratory_samples.rb │ ├── 20210519210302_add_entity_fields_to_laboratory_sample.rb │ ├── 20210521174932_create_batches.rb │ ├── 20210527215913_add_batch_to_laboratory_samples.rb │ ├── 20210603195140_remove_sample_type_from_laboratory_samples.rb │ ├── 20210614142904_create_test_qc_results.rb │ ├── 20210616220513_create_test_qc_result_assays.rb │ ├── 20210617115609_add_batch_number_to_batches.rb │ ├── 20210618125427_create_notes.rb │ ├── 20210701173411_add_isolate_name_to_laboratory_samples.rb │ ├── 20210710205858_add_batch_to_samples.rb │ ├── 20210711204458_add_sample_to_notes.rb │ ├── 20210711225220_create_assays.rb │ ├── 20210712213544_remove_laboratory_samples_and_test_qc_assays.rb │ ├── 20210719114233_add_isolate_name_to_samples.rb │ ├── 20210727162118_rename_assays_to_assay_attachments.rb │ ├── 20210727193447_add_loinc_code_and_result_to_assay_attachments.rb │ ├── 20210803151121_create_loinc_codes.rb │ ├── 20210805192509_remove_loinc_code_from_assay_attachments.rb │ ├── 20210806231327_add_loinc_code_to_assay_attachments.rb │ ├── 20210922233855_add_site_to_samples.rb │ ├── 20210924033359_add_site_to_batches.rb │ ├── 20211026021110_create_assay_file.rb │ ├── 20211028075009_add_assay_file_to_assay_attachments.rb │ ├── 20211104135226_migrate_assay_attachment_pictures_to_assay_file.rb │ ├── 20211201171200_add_specimen_role_to_samples.rb │ ├── 20211201181600_migrate_specimen_role.rb │ ├── 20211201221707_add_date_produced_to_batches.rb │ ├── 20211201224317_migrate_date_produced_in_batches.rb │ ├── 20211217152414_normalize_specimen_role_and_date_produced_samples.rb │ ├── 20211217160437_normalize_specimen_role_and_date_produced_batches.rb │ ├── 20220114191522_create_pending_institution_invites.rb │ ├── 20220114191523_add_pending_institution_invites_to_institutions.rb │ ├── 20220216134506_add_old_batch_number_to_samples.rb │ ├── 20220217152217_create_qc_infos.rb │ ├── 20220221152647_create_sample_transfers.rb │ ├── 20220222115959_add_qc_info_id_to_samples_notes_assays.rb │ ├── 20220331164557_create_transfer_packages.rb │ ├── 20220407173015_add_timestamps_to_transfer_packages.rb │ ├── 20220408103851_add_sender_institution_to_transfer_packages.rb │ ├── 20220412181435_change_sample_transfers_requires_transfer_package.rb │ ├── 20220503160512_create_boxes.rb │ ├── 20220505070823_add_confirmed_at_to_transfer_packages.rb │ ├── 20220513214928_convert_database_to_utf8_mb4.rb │ ├── 20220519121619_create_box_transfers.rb │ ├── 20220519135949_change_box_institution_null.rb │ ├── 20220531133731_add_blinded_to_boxes.rb │ ├── 20220531182313_drop_sample_transfers.rb │ ├── 20220602170219_add_indices_to_transfer_packages.rb │ ├── 20221109105200_change_sample_concentrations_to_single_value.rb │ ├── 20221125112700_create_samples_reports.rb │ ├── 20221223200957_add_distractor_to_samples.rb │ ├── 20221223203602_add_instruction_to_samples.rb │ ├── 20230731140544_fix_samples_measured_signals.rb │ └── 20231030102203_add_original_batch_id_to_samples.rb ├── schema.rb ├── seeds.rb └── seeds │ └── manifests │ ├── alere_pima_manifest.json │ ├── alere_q_manifest.json │ ├── deki_reader_manifest.json │ ├── epicenter_m.g.i.t._spanish_manifest.json │ ├── esequant_lr3_manifest.json │ ├── genexpert_csv_manifest.json │ ├── genexpert_manifest.json │ ├── genoscan_manifest.json │ └── micro_imager_manifest.json ├── deps ├── cdx-api-elasticsearch │ ├── LICENSE.txt │ ├── README.md │ ├── config │ │ └── cdx_api_fields.yml │ └── lib │ │ └── cdx │ │ └── api │ │ ├── elasticsearch.rb │ │ ├── elasticsearch │ │ ├── aggregations.rb │ │ ├── cdx_document_format.rb │ │ ├── config.rb │ │ ├── grouping │ │ │ ├── date_grouping_detail.rb │ │ │ ├── duration_grouping_detail.rb │ │ │ ├── flat_grouping_detail.rb │ │ │ ├── grouping_detail.rb │ │ │ ├── location_grouping_detail.rb │ │ │ ├── nested_grouping_detail.rb │ │ │ ├── range_grouping_detail.rb │ │ │ └── reference_table.rb │ │ ├── indexed_field.rb │ │ ├── local_timezone_conversion.rb │ │ ├── mapping_template.rb │ │ ├── model │ │ │ ├── field.rb │ │ │ └── scope.rb │ │ ├── multi_query.rb │ │ ├── null_query.rb │ │ ├── query.rb │ │ └── version.rb │ │ └── service.rb └── cdx_core │ ├── LICENSE.txt │ ├── README.md │ └── lib │ ├── cdx.rb │ ├── cdx │ ├── field.rb │ ├── fields.rb │ ├── scope.rb │ └── version.rb │ └── config │ └── fields.yml ├── docker-compose.base.yml ├── docker-compose.ci.yml ├── docker-compose.dev.yml ├── docker-compose.prod.yml ├── docker-compose.yml ├── docker-dev.env ├── docker ├── config-nndd └── web-run ├── etc ├── nndd │ ├── overrides.css │ └── overrides.js └── shapes │ └── .gitkeep ├── features ├── admin_invite_user.feature ├── alert.feature ├── incidents.feature ├── login.feature ├── password_reset.feature ├── step_definitions │ ├── .gitkeep │ ├── admin_invite_user_steps.rb │ ├── alert_steps.rb │ ├── incident_steps.rb │ ├── login_steps.rb │ └── password_reset_steps.rb └── support │ ├── alert_cucumber_helper.rb │ ├── env.rb │ ├── helpers.rb │ └── page_objects │ ├── alerts_index_page.rb │ ├── cdx_checkbox.rb │ ├── cdx_page_base.rb │ ├── cdx_page_helper.rb │ ├── cdx_select.rb │ ├── cdx_table.rb │ ├── dashboard_page.rb │ ├── device_model_page.rb │ ├── device_page.rb │ ├── edit_alert_page.rb │ ├── file_input.rb │ ├── home_page.rb │ ├── incident_page.rb │ ├── institution_page.rb │ ├── item_search_page.rb │ ├── login_page.rb │ ├── new_alert_page.rb │ ├── new_box_page.rb │ ├── new_encounter_page.rb │ ├── new_patient_page.rb │ ├── password_change.rb │ ├── patient_page.rb │ ├── policy_page.rb │ ├── roles_page.rb │ ├── samples_page.rb │ ├── show_encounter_page.rb │ ├── site_view_page.rb │ ├── test_results_page.rb │ ├── tests_run.rb │ ├── transfer_package_page.rb │ └── user_view_page.rb ├── lib ├── alerts.rb ├── assets │ └── .keep ├── delegate_missing_to.rb ├── demo_data.rb ├── extras │ ├── location_from_geojson.rb │ └── nndd_shape_importer.rb ├── reports.rb ├── reports │ ├── all_tests.rb │ ├── base.rb │ ├── device_errors.rb │ ├── devices.rb │ ├── errors.rb │ ├── grouped.rb │ ├── model_errors.rb │ ├── successful.rb │ └── unsuccessful.rb ├── ruby_dig.rb ├── sms.rb └── tasks │ ├── .keep │ ├── assay_files.rake │ ├── batches_info.rake │ ├── coverage.rake │ ├── cucumber.rake │ ├── db.rake │ ├── demo_data.rake │ ├── elasticsearch.rake │ ├── encryption.rake │ ├── ftp_monitor.rake │ ├── load_csv.rake │ ├── load_institutions.rake │ ├── load_manifests.rake │ ├── policy.rake │ ├── site.rake │ └── watch_csv.rake ├── log └── .keep ├── public ├── 404.html ├── 422.html ├── 500.html ├── favicon.ico ├── favicon.png ├── polygons │ └── .gitkeep ├── robots.txt ├── sample_acl.json └── templates │ ├── Instructions.txt │ ├── upload_box.csv │ └── upload_sample_results.csv ├── script ├── cucumber └── loinc_codes │ ├── LoincTableCore.csv │ └── import_csv.rb ├── spec ├── controllers │ ├── api │ │ ├── activations_controller_spec.rb │ │ ├── encounters_controller_spec.rb │ │ ├── filtrs_controller_spec.rb │ │ ├── institutions_controller_spec.rb │ │ ├── messages_controller_auth_spec.rb │ │ ├── messages_controller_creation_spec.rb │ │ ├── messages_controller_locations_spec.rb │ │ ├── sites_controller_spec.rb │ │ ├── subscribers_controller.rb │ │ ├── tests_controller_locations_spec.rb │ │ └── tests_controller_query_spec.rb │ ├── batches_controller_spec.rb │ ├── boxes_controller_spec.rb │ ├── device_commands_controller_spec.rb │ ├── device_logs_controller_spec.rb │ ├── device_messages_controller_spec.rb │ ├── device_models_controller_spec.rb │ ├── devices_controller_spec.rb │ ├── encounters_controller_spec.rb │ ├── filters_controller_spec.rb │ ├── institutions_controller_spec.rb │ ├── invitations_controller_spec.rb │ ├── nih_tables_controller_spec.rb │ ├── patients_controller_spec.rb │ ├── registrations_controller_spec.rb │ ├── roles_controller_spec.rb │ ├── samples_controller_spec.rb │ ├── samples_reports_controller_spec.rb │ ├── sites_controller_spec.rb │ ├── subscribers_controller_spec.rb │ ├── test_results_controller_spec.rb │ ├── transfer_packages_controller_spec.rb │ └── users_controller_spec.rb ├── features │ ├── boxes_spec.rb │ ├── deleted_spec.rb │ ├── device_model_spec.rb │ ├── device_spec.rb │ ├── encounter_spec.rb │ ├── invitation_spec.rb │ ├── navigation_context_spec.rb │ ├── patient_spec.rb │ ├── performance_spec.rb │ ├── policy_spec.rb │ ├── roles_spec.rb │ ├── transfer_packages_spec.rb │ └── welcome_spec.rb ├── fixtures │ ├── csvs │ │ ├── alere_pima.csv │ │ ├── alere_q.csv │ │ ├── alere_q.csv.zip │ │ ├── csv_box_1.csv │ │ ├── csv_box_2.csv │ │ ├── csv_box_no_headers.csv │ │ ├── epicenter_headless_sample.csv │ │ ├── epicenter_headless_sample_utf16.csv │ │ ├── epicenter_sample.csv │ │ ├── genoscan_sample.csv │ │ ├── samples_results_1.csv │ │ └── samples_results_2.csv │ ├── jsons │ │ ├── genexpert_sample.json │ │ ├── genexpert_sample_mtb_very_low.json │ │ ├── genexpert_sample_qc.json │ │ └── micro_imager_sample.json │ └── xmls │ │ └── deki_reader_sample.xml ├── helpers │ ├── alerts_helper.rb │ ├── cdx_form_helper_spec.rb │ ├── mailer_helper_spec.rb │ └── users_helper_spec.rb ├── jobs │ ├── daily_demo_data_spec.rb │ ├── hourly_alert_job_spec.rb │ └── hourly_utilization_efficiency_job.rb ├── lib │ ├── alerts_spec.rb │ ├── reports │ │ ├── all_tests_spec.rb │ │ ├── base_spec.rb │ │ ├── device_spec.rb │ │ ├── error_spec.rb │ │ └── grouped_spec.rb │ └── sms_spec.rb ├── mailers │ ├── alert_mailer_list_spec.rb │ ├── alert_mailer_spec.rb │ ├── device_mailer_spec.rb │ ├── invitation_mailer_spec.rb │ └── previews │ │ ├── alert_mailer_preview.rb │ │ ├── device_mailer_preview.rb │ │ └── invitation_mailer_preview.rb ├── models │ ├── activation_token_spec.rb │ ├── alert_recipient_spec.rb │ ├── alert_spec.rb │ ├── assay_attachment_spec.rb │ ├── blender_spec.rb │ ├── cdx_api_elasticsearch_mapping_template_spec.rb │ ├── cdx_api_multi_spec.rb │ ├── cdx_api_spec.rb │ ├── cdx_spec.rb │ ├── computed_policy_spec.rb │ ├── condition_spec.rb │ ├── csv_builder_spec.rb │ ├── csv_message_parser_spec.rb │ ├── device_message_importer_spec.rb │ ├── device_message_processor_spec.rb │ ├── device_message_spec.rb │ ├── device_model_spec.rb │ ├── device_spec.rb │ ├── encounter_indexer_spec.rb │ ├── encounter_spec.rb │ ├── encounters_schema_spec.rb │ ├── field_spec.rb │ ├── ftp_monitor_spec.rb │ ├── institution_spec.rb │ ├── json_message_parser_spec.rb │ ├── local_timezone_conversion_spec.rb │ ├── manifest_application_spec.rb │ ├── manifest_creation_spec.rb │ ├── manifest_field_mapping_spec.rb │ ├── manifest_operations_spec.rb │ ├── manifest_validations_spec.rb │ ├── message_encryption_spec.rb │ ├── patient_spec.rb │ ├── policy_spec.rb │ ├── query_spec.rb │ ├── resource_spec.rb │ ├── role_spec.rb │ ├── sample_identifier_spec.rb │ ├── sample_spec.rb │ ├── samples_report_spec.rb │ ├── site_spec.rb │ ├── ssh_key_spec.rb │ ├── subscriber_spec.rb │ ├── test_result_indexer_spec.rb │ ├── test_result_query_spec.rb │ ├── test_result_spec.rb │ ├── tests_schema_spec.rb │ ├── transfer_package_spec.rb │ ├── user_spec.rb │ └── xml_message_parser_spec.rb ├── policy_spec_helper.rb ├── spec_helper.rb └── support │ ├── blueprints.rb │ ├── capybara.rb │ ├── cdx_api_helpers.rb │ ├── cdx_fields_helper.rb │ ├── database_cleaner.rb │ ├── default_manifest.rb │ ├── default_params_helper.rb │ ├── device_message_spec_helper.rb │ ├── device_spec_helper.rb │ ├── elasticsearch_context.rb │ ├── feature_spec_helpers.rb │ ├── manifest_spec_helper.rb │ ├── manifest_validation_context.rb │ ├── spec_fixtures.rb │ ├── test_result_spec_helper.rb │ 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-------------------------------------------------------------------------------- /app/views/components/_cdx_tabs.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/components/_cdx_tabs.html.haml -------------------------------------------------------------------------------- /app/views/components/_empty_data.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/components/_empty_data.html.haml -------------------------------------------------------------------------------- /app/views/components/_setting_card.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/components/_setting_card.html.haml -------------------------------------------------------------------------------- /app/views/dashboards/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/dashboards/index.html.haml -------------------------------------------------------------------------------- /app/views/dashboards/nndd.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/dashboards/nndd.haml -------------------------------------------------------------------------------- /app/views/device_logs/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_logs/index.haml -------------------------------------------------------------------------------- /app/views/device_messages/_filters.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_messages/_filters.haml -------------------------------------------------------------------------------- /app/views/device_messages/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_messages/index.haml -------------------------------------------------------------------------------- /app/views/device_models/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/_form.haml -------------------------------------------------------------------------------- /app/views/device_models/_publish.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/_publish.haml -------------------------------------------------------------------------------- /app/views/device_models/edit.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/edit.haml -------------------------------------------------------------------------------- /app/views/device_models/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/index.haml -------------------------------------------------------------------------------- /app/views/device_models/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/new.haml -------------------------------------------------------------------------------- /app/views/device_models/show.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/show.haml -------------------------------------------------------------------------------- /app/views/device_models/show.json.jbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/device_models/show.json.jbuilder -------------------------------------------------------------------------------- /app/views/devices/_activation_token.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_activation_token.haml -------------------------------------------------------------------------------- /app/views/devices/_custom_mappings.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_custom_mappings.haml -------------------------------------------------------------------------------- /app/views/devices/_device_card.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_device_card.haml -------------------------------------------------------------------------------- /app/views/devices/_filters.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_filters.haml -------------------------------------------------------------------------------- /app/views/devices/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_form.haml -------------------------------------------------------------------------------- /app/views/devices/_secret_key.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/_secret_key.haml -------------------------------------------------------------------------------- /app/views/devices/edit.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/edit.haml -------------------------------------------------------------------------------- /app/views/devices/index.csv.csvbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/index.csv.csvbuilder -------------------------------------------------------------------------------- /app/views/devices/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/index.haml -------------------------------------------------------------------------------- /app/views/devices/index.json.jbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/index.json.jbuilder -------------------------------------------------------------------------------- /app/views/devices/logs.haml: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /app/views/devices/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/new.haml -------------------------------------------------------------------------------- /app/views/devices/performance.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/performance.haml -------------------------------------------------------------------------------- /app/views/devices/regenerate_key.js.erb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/regenerate_key.js.erb -------------------------------------------------------------------------------- /app/views/devices/setup.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/setup.haml -------------------------------------------------------------------------------- /app/views/devices/show.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/show.haml -------------------------------------------------------------------------------- /app/views/devices/token.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devices/token.haml -------------------------------------------------------------------------------- /app/views/devise/confirmations/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/confirmations/new.html.haml -------------------------------------------------------------------------------- /app/views/devise/passwords/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/passwords/edit.html.haml -------------------------------------------------------------------------------- /app/views/devise/passwords/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/passwords/new.html.haml -------------------------------------------------------------------------------- /app/views/devise/registrations/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/registrations/edit.html.haml -------------------------------------------------------------------------------- /app/views/devise/registrations/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/registrations/new.html.haml -------------------------------------------------------------------------------- /app/views/devise/sessions/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/sessions/new.html.haml -------------------------------------------------------------------------------- /app/views/devise/shared/_links.html.erb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/shared/_links.html.erb -------------------------------------------------------------------------------- /app/views/devise/unlocks/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/devise/unlocks/new.html.haml -------------------------------------------------------------------------------- /app/views/encounters/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/encounters/edit.html.haml -------------------------------------------------------------------------------- /app/views/encounters/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/encounters/new.html.haml -------------------------------------------------------------------------------- /app/views/encounters/new_index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/encounters/new_index.html.haml -------------------------------------------------------------------------------- /app/views/encounters/show.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/encounters/show.html.haml -------------------------------------------------------------------------------- /app/views/filters/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/filters/_form.haml -------------------------------------------------------------------------------- /app/views/filters/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/filters/edit.html.haml -------------------------------------------------------------------------------- /app/views/filters/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/filters/index.html.haml -------------------------------------------------------------------------------- /app/views/filters/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/filters/new.haml -------------------------------------------------------------------------------- /app/views/form_builder/_field.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/form_builder/_field.haml -------------------------------------------------------------------------------- /app/views/form_builder/_field_errors.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/form_builder/_field_errors.haml -------------------------------------------------------------------------------- /app/views/form_builder/_form_actions.haml: -------------------------------------------------------------------------------- 1 | .row.button-actions 2 | .col 3 | = yield 4 | -------------------------------------------------------------------------------- /app/views/form_builder/_form_errors.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/form_builder/_form_errors.haml -------------------------------------------------------------------------------- /app/views/home/design.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/home/design.haml -------------------------------------------------------------------------------- /app/views/home/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/home/index.haml -------------------------------------------------------------------------------- /app/views/home/join.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/home/join.haml -------------------------------------------------------------------------------- /app/views/home/settings.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/home/settings.html.haml -------------------------------------------------------------------------------- /app/views/home/verify.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/home/verify.haml -------------------------------------------------------------------------------- /app/views/incidents/_filters.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/incidents/_filters.html.haml -------------------------------------------------------------------------------- /app/views/incidents/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/incidents/index.html.haml -------------------------------------------------------------------------------- /app/views/institutions/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/institutions/_form.haml -------------------------------------------------------------------------------- /app/views/institutions/edit.haml: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- /app/views/institutions/no_data_allowed.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/institutions/no_data_allowed.haml -------------------------------------------------------------------------------- /app/views/institutions/pending_approval.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/institutions/pending_approval.haml -------------------------------------------------------------------------------- /app/views/layouts/application.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/layouts/application.html.haml -------------------------------------------------------------------------------- /app/views/layouts/clean.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/layouts/clean.haml -------------------------------------------------------------------------------- /app/views/layouts/devise.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/layouts/devise.haml -------------------------------------------------------------------------------- /app/views/layouts/mailer.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/layouts/mailer.html.haml -------------------------------------------------------------------------------- /app/views/layouts/mailer.text.haml: -------------------------------------------------------------------------------- 1 | = yield 2 | -------------------------------------------------------------------------------- /app/views/layouts/messages.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/layouts/messages.haml -------------------------------------------------------------------------------- /app/views/locations/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/locations/index.html.haml -------------------------------------------------------------------------------- /app/views/locations/index.json.jbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/locations/index.json.jbuilder -------------------------------------------------------------------------------- /app/views/locations/show.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/locations/show.html.haml -------------------------------------------------------------------------------- /app/views/locations/show.json.jbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/locations/show.json.jbuilder -------------------------------------------------------------------------------- /app/views/nih_tables/nih_batches.csvbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/nih_tables/nih_batches.csvbuilder -------------------------------------------------------------------------------- /app/views/nih_tables/nih_lod.csv.csvbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/nih_tables/nih_lod.csv.csvbuilder -------------------------------------------------------------------------------- /app/views/patients/_filters.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/_filters.haml -------------------------------------------------------------------------------- /app/views/patients/_form.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/_form.html.haml -------------------------------------------------------------------------------- /app/views/patients/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/edit.html.haml -------------------------------------------------------------------------------- /app/views/patients/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/index.html.haml -------------------------------------------------------------------------------- /app/views/patients/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/new.html.haml -------------------------------------------------------------------------------- /app/views/patients/show.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/patients/show.html.haml -------------------------------------------------------------------------------- /app/views/policies/_form.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/policies/_form.html.haml -------------------------------------------------------------------------------- /app/views/policies/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/policies/edit.html.haml -------------------------------------------------------------------------------- /app/views/policies/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/policies/index.haml -------------------------------------------------------------------------------- /app/views/policies/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/policies/new.html.haml -------------------------------------------------------------------------------- /app/views/qc_infos/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/qc_infos/_form.haml -------------------------------------------------------------------------------- /app/views/qc_infos/_show_assays.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/qc_infos/_show_assays.haml -------------------------------------------------------------------------------- /app/views/qc_infos/_show_notes.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/qc_infos/_show_notes.haml 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/roles/edit.haml -------------------------------------------------------------------------------- /app/views/roles/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/roles/index.haml -------------------------------------------------------------------------------- /app/views/roles/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/roles/new.haml -------------------------------------------------------------------------------- /app/views/samples/_barcode_card.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/_barcode_card.haml 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/_form_assays_js.haml -------------------------------------------------------------------------------- /app/views/samples/_form_notes.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/_form_notes.haml -------------------------------------------------------------------------------- /app/views/samples/_form_notes_js.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/_form_notes_js.haml -------------------------------------------------------------------------------- /app/views/samples/_index_bulk_actions_js.haml: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/edit.haml -------------------------------------------------------------------------------- /app/views/samples/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/index.haml -------------------------------------------------------------------------------- /app/views/samples/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/new.haml -------------------------------------------------------------------------------- /app/views/samples/upload_results.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples/upload_results.haml 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples_reports/new.haml -------------------------------------------------------------------------------- /app/views/samples_reports/show.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/samples_reports/show.haml -------------------------------------------------------------------------------- /app/views/shared/_footer.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/shared/_footer.haml -------------------------------------------------------------------------------- /app/views/shared/_header_nav.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/shared/_header_nav.haml -------------------------------------------------------------------------------- /app/views/shared/_list.haml: -------------------------------------------------------------------------------- 1 | .selector-list-item 2 | = yield 3 | -------------------------------------------------------------------------------- /app/views/shared/_pagination.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/shared/_pagination.html.haml -------------------------------------------------------------------------------- /app/views/shared/_validation_errors.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/shared/_validation_errors.html.haml -------------------------------------------------------------------------------- /app/views/sites/_filters.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/_filters.haml -------------------------------------------------------------------------------- /app/views/sites/_form.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/_form.html.haml -------------------------------------------------------------------------------- /app/views/sites/_show.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/_show.html.haml -------------------------------------------------------------------------------- /app/views/sites/_side.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/_side.html.haml -------------------------------------------------------------------------------- /app/views/sites/devices.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/devices.html.haml -------------------------------------------------------------------------------- /app/views/sites/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/edit.html.haml -------------------------------------------------------------------------------- /app/views/sites/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/index.html.haml -------------------------------------------------------------------------------- /app/views/sites/index.json.jbuilder: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/index.json.jbuilder -------------------------------------------------------------------------------- /app/views/sites/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/sites/new.html.haml -------------------------------------------------------------------------------- /app/views/subscribers/_form.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/subscribers/_form.html.haml -------------------------------------------------------------------------------- /app/views/subscribers/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/subscribers/edit.html.haml -------------------------------------------------------------------------------- /app/views/subscribers/index.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/subscribers/index.html.haml -------------------------------------------------------------------------------- /app/views/subscribers/new.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/subscribers/new.html.haml -------------------------------------------------------------------------------- /app/views/test_results/_filters.haml: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- /app/views/transfer_packages/_form.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/transfer_packages/_form.haml -------------------------------------------------------------------------------- /app/views/transfer_packages/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/transfer_packages/index.haml -------------------------------------------------------------------------------- /app/views/transfer_packages/new.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/transfer_packages/new.haml -------------------------------------------------------------------------------- /app/views/transfer_packages/show.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/transfer_packages/show.haml -------------------------------------------------------------------------------- /app/views/users/_form.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/users/_form.html.haml -------------------------------------------------------------------------------- /app/views/users/edit.html.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/users/edit.html.haml -------------------------------------------------------------------------------- /app/views/users/index.haml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/instedd/cdx/HEAD/app/views/users/index.haml 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