├── Hippocampal Volume Quantification in Alzheimer's Progression ├── Section 1 │ ├── Final Project EDA.ipynb │ ├── desktop │ │ ├── slicer.desktop │ │ └── slicer.png │ ├── img │ │ ├── Slicer.png │ │ └── nomogram_fem_right.svg │ ├── launch_jupyter.sh │ └── out │ │ └── Final Project EDA.ipynb ├── Section 2 │ ├── desktop │ │ ├── slicer.desktop │ │ └── slicer.png │ ├── launch_jupyter.sh │ ├── out │ │ ├── README.md │ │ ├── Tensorboard screenshots │ │ │ ├── Screen Shot 2020-06-15 at 11.52.36 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.55.07 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.55.58 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.57.07 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.57.23 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.57.37 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.57.54 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.58.25 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.58.42 AM.png │ │ │ ├── Screen Shot 2020-06-15 at 11.59.04 AM.png │ │ │ └── Screen Shot 2020-06-15 at 11.59.20 AM.png │ │ └── results │ │ │ └── 2020-06-15_0928_Basic_unet │ │ │ └── results.json │ └── src │ │ ├── data_prep │ │ ├── HippocampusDatasetLoader.py │ │ ├── SlicesDataset.py │ │ └── __pycache__ │ │ │ ├── HippocampusDatasetLoader.cpython-38.pyc │ │ │ └── SlicesDataset.cpython-38.pyc │ │ ├── environment.yml │ │ ├── experiments │ │ ├── UNetExperiment.py │ │ └── __pycache__ │ │ │ ├── UNetExperiment.cpython-36.pyc │ │ │ └── UNetExperiment.cpython-38.pyc │ │ ├── results │ │ └── 2020-06-15_0928_Basic_unet │ │ │ └── results.json │ │ └── utils │ │ ├── __pycache__ │ │ ├── utils.cpython-38.pyc │ │ └── volume_stats.cpython-38.pyc │ │ ├── utils.py │ │ └── volume_stats.py └── Section 3 │ ├── launch_OHIF.sh │ ├── launch_orthanc.sh │ ├── out │ ├── README.md │ ├── Validation plan.pdf │ ├── report.dcm │ └── screenshots OHIF │ │ ├── Screen Shot 2020-06-15 at 5.00.26 PM.png │ │ ├── Screen Shot 2020-06-15 at 5.01.56 PM.png │ │ ├── Screen Shot 2020-06-15 at 5.03.08 PM.png │ │ ├── Screen Shot 2020-06-15 at 5.04.27 PM.png │ │ ├── Screen Shot 2020-06-15 at 5.04.48 PM.png │ │ ├── Screen Shot 2020-06-15 at 5.06.29 PM.png │ │ └── Screen Shot 2020-06-15 at 5.07.08 PM.png │ └── src │ ├── deploy_scripts │ ├── route_dicoms.lua │ ├── send_result.sh │ ├── send_volume.sh │ └── start_listener.sh │ ├── environment.yml │ ├── inference_dcm.py │ └── utils │ ├── __pycache__ │ ├── utils.cpython-38.pyc │ └── volume_stats.cpython-38.pyc │ ├── utils.py │ └── volume_stats.py ├── Motion Compensated Pulse Rate Estimation ├── Section 1 │ ├── README.md │ └── pulse_rate_starter.ipynb └── Section 2 │ ├── clinical_app_starter.ipynb │ └── pkgs.txt ├── Patient Selection for Diabetes Drug Testing Workspace ├── README.md ├── data_schema_references │ ├── IDs_mapping.csv │ ├── ndc_lookup_table.csv │ └── project_data_schema.csv └── starter_code │ ├── medication_lookup_tables │ └── final_ndc_lookup_table │ └── student_project.ipynb ├── Pneumonia Detection From Chest X-Rays ├── Build and train model.ipynb ├── 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