├── .gitignore ├── .gitmodules ├── LICENSE ├── Makefile ├── README.md ├── src ├── main.cc ├── mhap.cc ├── mhap.h └── parameters.h ├── test-data └── lambda │ ├── NC_001416.fa │ └── reads.fastq └── wrap-minialign.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/.gitmodules -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/README.md -------------------------------------------------------------------------------- /src/main.cc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/src/main.cc -------------------------------------------------------------------------------- /src/mhap.cc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/src/mhap.cc -------------------------------------------------------------------------------- /src/mhap.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/src/mhap.h -------------------------------------------------------------------------------- /src/parameters.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/src/parameters.h -------------------------------------------------------------------------------- /test-data/lambda/NC_001416.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/test-data/lambda/NC_001416.fa -------------------------------------------------------------------------------- /test-data/lambda/reads.fastq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/test-data/lambda/reads.fastq -------------------------------------------------------------------------------- /wrap-minialign.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/isovic/minialign/HEAD/wrap-minialign.sh --------------------------------------------------------------------------------