├── .github └── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── LICENSE.md ├── MANIFEST.in ├── README.md ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── conf.py │ ├── index.rst │ ├── lagomorph.adjrep.rst │ ├── lagomorph.affine.rst │ ├── lagomorph.data.rst │ ├── lagomorph.deform.rst │ ├── lagomorph.diff.rst │ ├── lagomorph.lddmm.rst │ ├── lagomorph.metric.rst │ ├── lagomorph.utils.rst │ ├── lagomorph.version.rst │ ├── lagomorph.vis.rst │ └── sphinxpypath │ └── lagomorph_ext.py ├── environment.yml ├── examples ├── .gitattributes ├── .gitignore ├── AffineAtlas.ipynb └── DeepLDDMMAtlas.ipynb ├── lagomorph ├── __init__.py ├── __main__.py ├── adjrep.py ├── affine.py ├── data.py ├── deform.py ├── diff.py ├── extension │ ├── cpu │ │ └── affine.cpp │ ├── cuda │ │ ├── affine.cu │ │ ├── diff.cu │ │ ├── interp.cu │ │ └── metric.cu │ ├── extension.cpp │ └── include │ │ ├── atomic.cuh │ │ ├── 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