14 |
15 |
16 | [](https://cran.r-project.org/package=asciiSetupReader)
17 | [](https://ci.appveyor.com/project/jacobkap/asciiSetupReader)
18 | [](https://app.codecov.io/github/jacobkap/asciiSetupReader?branch=master)
19 | [](https://cran.r-project.org/package=asciiSetupReader)
20 | [](https://lifecycle.r-lib.org/articles/stages.html)
21 |
22 |
23 | ## Overview
24 |
25 | Some (usually older) data sets are only available in fixed-width ASCII files (.txt or .dat) that have an .sps (SPSS) or .sas (SAS) setup file explaining to the software how to read that file. These file combinations are sometimes referred to as .txt+.sps, .txt+.sas, .dat+.sps, .dat+.sas. This package allows you to read in the data if you have both the fixed-width file and its accompanying setup file.
26 |
27 | ## Installation
28 |
29 | ``` r
30 | To install this package, use the code
31 | install.packages("asciiSetupReader")
32 |
33 |
34 | # The development version is available on Github.
35 | # install.packages("devtools")
36 | devtools::install_github("jacobkap/asciiSetupReader")
37 | ```
38 |
39 | ## Usage
40 |
41 | The parameters `data` and `setup_file` are the only ones requires to run the package though three optional parameters allow you to customize results.
42 |
43 | `data` - A string containing the name of the data file
44 |
45 | `setup_file` - A string containing the name of the setup file
46 |
47 | Both files must be in your working directory or the string must contain the path to the file. Below is an example of reading in the example dataset - the original data and setup files can be found [here](https://www.icpsr.umich.edu/icpsrweb/NACJD/studies/9327?q=&restrictionType%5B0%5D=Public+Use&classification%5B0%5D=NACJD.IX.*&dataFormat%5B0%5D=SPSS).
48 |
49 | Please note that I am only using `system.file()` here so the vignette builds in the package even not on my own computer. You will not use this in the function. Instead you'd simply input `data = "example_data.zip"` and `setup_file = "example_setup.sps"`. The data file does not have to be in a zip folder, it is only in a zip folder here to reduce the size of this package. In most cases it will be a .dat or a .txt file.
50 |
51 | ```{r}
52 | data <- system.file("extdata", "example_data.zip",
53 | package = "asciiSetupReader")
54 | setup_file <- system.file("extdata", "example_setup.sps",
55 | package = "asciiSetupReader")
56 |
57 | example <- asciiSetupReader::read_ascii_setup(data = data,
58 | setup_file = setup_file)
59 | example[1:6, 1:4] # Look at first 6 rows and first 4 columns
60 | ```
61 |
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/README.md:
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1 |
2 | # asciiSetupReader
3 |
4 |
5 |
6 | [](https://cran.r-project.org/package=asciiSetupReader)
7 | [](https://ci.appveyor.com/project/jacobkap/asciiSetupReader)
9 | [](https://app.codecov.io/github/jacobkap/asciiSetupReader?branch=master)
11 | [](https://cran.r-project.org/package=asciiSetupReader)
12 | [](https://lifecycle.r-lib.org/articles/stages.html)
13 |
14 |
15 | ## Overview
16 |
17 | Some (usually older) data sets are only available in fixed-width ASCII
18 | files (.txt or .dat) that have an .sps (SPSS) or .sas (SAS) setup file
19 | explaining to the software how to read that file. These file
20 | combinations are sometimes referred to as .txt+.sps, .txt+.sas,
21 | .dat+.sps, .dat+.sas. This package allows you to read in the data if you
22 | have both the fixed-width file and its accompanying setup file.
23 |
24 | ## Installation
25 |
26 | ``` r
27 | To install this package, use the code
28 | install.packages("asciiSetupReader")
29 |
30 |
31 | # The development version is available on Github.
32 | # install.packages("devtools")
33 | devtools::install_github("jacobkap/asciiSetupReader")
34 | ```
35 |
36 | ## Usage
37 |
38 | The parameters `data` and `setup_file` are the only ones requires to run
39 | the package though three optional parameters allow you to customize
40 | results.
41 |
42 | `data` - A string containing the name of the data file
43 |
44 | `setup_file` - A string containing the name of the setup file
45 |
46 | Both files must be in your working directory or the string must contain
47 | the path to the file. Below is an example of reading in the example
48 | dataset - the original data and setup files can be found
49 | [here](https://www.icpsr.umich.edu/icpsrweb/NACJD/studies/9327?q=&restrictionType%5B0%5D=Public+Use&classification%5B0%5D=NACJD.IX.*&dataFormat%5B0%5D=SPSS).
50 |
51 | Please note that I am only using `system.file()` here so the vignette
52 | builds in the package even not on my own computer. You will not use this
53 | in the function. Instead you’d simply input `data = "example_data.zip"`
54 | and `setup_file = "example_setup.sps"`. The data file does not have to
55 | be in a zip folder, it is only in a zip folder here to reduce the size
56 | of this package. In most cases it will be a .dat or a .txt file.
57 |
58 | ``` r
59 | data <- system.file("extdata", "example_data.zip",
60 | package = "asciiSetupReader")
61 | setup_file <- system.file("extdata", "example_setup.sps",
62 | package = "asciiSetupReader")
63 |
64 | example <- asciiSetupReader::read_ascii_setup(data = data,
65 | setup_file = setup_file)
66 | example[1:6, 1:4] # Look at first 6 rows and first 4 columns
67 | #> IDENTIFIER_CODE NUMERIC_STATE_CODE ORI_CODE GROUP
68 | #> 1 SHR master file Alabama AL00112 Cit 50,000-99,999
69 | #> 2 SHR master file Alabama AL00112 Cit 50,000-99,999
70 | #> 3 SHR master file Alabama AL00112 Cit 50,000-99,999
71 | #> 4 SHR master file Arizona AZ00189 Cit < 2,500
72 | #> 5 SHR master file Arizona AZ00189 Cit < 2,500
73 | #> 6 SHR master file Arizona AZ00189 Cit < 2,500
74 | ```
75 |
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/appveyor.yml:
--------------------------------------------------------------------------------
1 | # DO NOT CHANGE the "init" and "install" sections below
2 |
3 | # Download script file from GitHub
4 | init:
5 | ps: |
6 | $ErrorActionPreference = "Stop"
7 | Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
8 | Import-Module '..\appveyor-tool.ps1'
9 |
10 | install:
11 | ps: Bootstrap
12 |
13 | environment:
14 | USE_RTOOLS: true
15 |
16 | cache:
17 | # - C:\RLibrary
18 |
19 | # Adapt as necessary starting from here
20 |
21 | build_script:
22 | - travis-tool.sh install_deps
23 |
24 | test_script:
25 | - travis-tool.sh run_tests
26 |
27 | on_failure:
28 | - 7z a failure.zip *.Rcheck\*
29 | - appveyor PushArtifact failure.zip
30 |
31 | artifacts:
32 | - path: '*.Rcheck\**\*.log'
33 | name: Logs
34 |
35 | - path: '*.Rcheck\**\*.out'
36 | name: Logs
37 |
38 | - path: '*.Rcheck\**\*.fail'
39 | name: Logs
40 |
41 | - path: '*.Rcheck\**\*.Rout'
42 | name: Logs
43 |
44 | - path: '\*_*.tar.gz'
45 | name: Bits
46 |
47 | - path: '\*_*.zip'
48 | name: Bits
49 |
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/asciiReader.Rproj:
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1 | Version: 1.0
2 |
3 | RestoreWorkspace: No
4 | SaveWorkspace: No
5 | AlwaysSaveHistory: No
6 |
7 | EnableCodeIndexing: Yes
8 | UseSpacesForTab: Yes
9 | NumSpacesForTab: 2
10 | Encoding: UTF-8
11 |
12 | RnwWeave: knitr
13 | LaTeX: pdfLaTeX
14 |
15 | AutoAppendNewline: Yes
16 | StripTrailingWhitespace: Yes
17 |
18 | BuildType: Package
19 | PackageUseDevtools: Yes
20 | PackageRoxygenize: rd,collate,vignette
21 |
--------------------------------------------------------------------------------
/codecov.yml:
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1 | comment: false
2 |
3 | coverage:
4 | status:
5 | project:
6 | default:
7 | target: auto
8 | threshold: 1%
9 | patch:
10 | default:
11 | target: auto
12 | threshold: 1%
13 |
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/cran-comments.md:
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1 | ## Test environments
2 |
3 | * local Windows install, R 4.2.1
4 | * Rhub
5 | + linux (R-devel)
6 | + macos-arm64 (R-devel)
7 | + macos (R-devel)
8 | + windows (R-devel)
9 | * win-builder (devel)
10 |
11 | ## R CMD check results
12 |
13 | There were no ERRORs or WARNINGs or NOTES.
14 |
15 | ## Reverse dependencies
16 |
17 | There is 1 reverse dependency. revdepcheck::revdep_check() returns OK for all 1.
18 |
19 |
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135 | NA
132 |Please briefly describe your problem and what output you expect. If you have a question, please don’t use this form. Instead, ask on https://stackoverflow.com/ or https://community.rstudio.com/.
136 |Please include a minimal reproducible example (AKA a reprex). If you’ve never heard of a reprex before, start by reading https://www.tidyverse.org/help/#reprex.
137 |138 |
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139 |
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134 | License
132 |YEAR: 2019 135 | COPYRIGHT HOLDER: Jacob Kaplan 136 |137 | 138 |
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1 | // Hide empty tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
2 | // v0.0.1
3 | // Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
4 |
5 | document.addEventListener('DOMContentLoaded', function() {
6 | const codeList = document.getElementsByClassName("sourceCode");
7 | for (var i = 0; i < codeList.length; i++) {
8 | var linkList = codeList[i].getElementsByTagName('a');
9 | for (var j = 0; j < linkList.length; j++) {
10 | if (linkList[j].innerHTML === "") {
11 | linkList[j].setAttribute('aria-hidden', 'true');
12 | }
13 | }
14 | }
15 | });
16 |
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/docs/articles/Introduction_to_asciiSetupReader_files/elevate-section-attrs-2.0/elevate-section-attrs.js:
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1 | $(function() {
2 | $("div.section[class*='level'], section[class*='level']").each(function(i, el) {
3 | var $section = $(el);
4 | var $header = $section.children().filter(":header").first();
5 | if ($header.length === 0) return;
6 | var attrs = $header[0].attributes;
7 | for (var a = 0; a < attrs.length; a++) {
8 | var nm = attrs[a].name;
9 | var val = attrs[a].value;
10 | if (nm === "class") {
11 | $section.addClass(val);
12 | $header.removeClass(val);
13 | continue;
14 | }
15 | $section.attr(nm, val);
16 | $header.attr(nm, null);
17 | }
18 | });
19 | });
20 |
21 |
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
--------------------------------------------------------------------------------
/docs/articles/Introduction_to_asciiSetupReader_files/header-attrs-2.4/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
--------------------------------------------------------------------------------
/docs/articles/Introduction_to_asciiSetupReader_files/header-attrs-2.6/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
--------------------------------------------------------------------------------
/docs/articles/Introduction_to_asciiSetupReader_files/header-attrs-2.7/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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133 |
134 | MIT License
132 |
135 |
136 |
141 |
142 | Copyright (c) 2019 Jacob Kaplan
137 |Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
138 |The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
139 |THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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1 | // Hide empty tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
2 | // v0.0.1
3 | // Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
4 |
5 | document.addEventListener('DOMContentLoaded', function() {
6 | const codeList = document.getElementsByClassName("sourceCode");
7 | for (var i = 0; i < codeList.length; i++) {
8 | var linkList = codeList[i].getElementsByTagName('a');
9 | for (var j = 0; j < linkList.length; j++) {
10 | if (linkList[j].innerHTML === "") {
11 | linkList[j].setAttribute('aria-hidden', 'true');
12 | }
13 | }
14 | }
15 | });
16 |
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1 | $(function() {
2 | $("div.section[class*='level'], section[class*='level']").each(function(i, el) {
3 | var $section = $(el);
4 | var $header = $section.children().filter(":header").first();
5 | if ($header.length === 0) return;
6 | var attrs = $header[0].attributes;
7 | for (var a = 0; a < attrs.length; a++) {
8 | var nm = attrs[a].name;
9 | var val = attrs[a].value;
10 | if (nm === "class") {
11 | $section.addClass(val);
12 | $header.removeClass(val);
13 | continue;
14 | }
15 | $section.attr(nm, val);
16 | $header.attr(nm, null);
17 | }
18 | });
19 | });
20 |
21 |
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/making-an-sps-file_files/header-attrs-2.4/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/making-an-sps-file_files/header-attrs-2.6/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/making-an-sps-file_files/header-attrs-2.7/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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1 | // Hide empty tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
2 | // v0.0.1
3 | // Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
4 |
5 | document.addEventListener('DOMContentLoaded', function() {
6 | const codeList = document.getElementsByClassName("sourceCode");
7 | for (var i = 0; i < codeList.length; i++) {
8 | var linkList = codeList[i].getElementsByTagName('a');
9 | for (var j = 0; j < linkList.length; j++) {
10 | if (linkList[j].innerHTML === "") {
11 | linkList[j].setAttribute('aria-hidden', 'true');
12 | }
13 | }
14 | }
15 | });
16 |
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1 | $(function() {
2 | $("div.section[class*='level'], section[class*='level']").each(function(i, el) {
3 | var $section = $(el);
4 | var $header = $section.children().filter(":header").first();
5 | if ($header.length === 0) return;
6 | var attrs = $header[0].attributes;
7 | for (var a = 0; a < attrs.length; a++) {
8 | var nm = attrs[a].name;
9 | var val = attrs[a].value;
10 | if (nm === "class") {
11 | $section.addClass(val);
12 | $header.removeClass(val);
13 | continue;
14 | }
15 | $section.attr(nm, val);
16 | $header.attr(nm, null);
17 | }
18 | });
19 | });
20 |
21 |
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/docs/articles/parsing-an-sps-or-sas-file_files/header-attrs-2.3.2/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/parsing-an-sps-or-sas-file_files/header-attrs-2.4/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/parsing-an-sps-or-sas-file_files/header-attrs-2.6/header-attrs.js:
--------------------------------------------------------------------------------
1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
--------------------------------------------------------------------------------
/docs/articles/parsing-an-sps-or-sas-file_files/header-attrs-2.7/header-attrs.js:
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1 | // Pandoc 2.9 adds attributes on both header and div. We remove the former (to
2 | // be compatible with the behavior of Pandoc < 2.8).
3 | document.addEventListener('DOMContentLoaded', function(e) {
4 | var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
5 | var i, h, a;
6 | for (i = 0; i < hs.length; i++) {
7 | h = hs[i];
8 | if (!/^h[1-6]$/i.test(h.tagName)) continue; // it should be a header h1-h6
9 | a = h.attributes;
10 | while (a.length > 0) h.removeAttribute(a[0].name);
11 | }
12 | });
13 |
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/docs/articles/parsing_a_sps_setup_file_files/figure-html/unnamed-chunk-1-1.png:
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https://raw.githubusercontent.com/jacobkap/asciiSetupReader/cdfcf88667b63f2d4426403dc527fdc9faac2955/docs/articles/parsing_a_sps_setup_file_files/figure-html/unnamed-chunk-1-1.png
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/docs/articles/parsing_a_sps_setup_file_files/figure-html/unnamed-chunk-1-2.png:
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https://raw.githubusercontent.com/jacobkap/asciiSetupReader/cdfcf88667b63f2d4426403dc527fdc9faac2955/docs/articles/parsing_a_sps_setup_file_files/figure-html/unnamed-chunk-1-2.png
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/docs/authors.html:
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