├── B_cells_analysis.R ├── README.md ├── ST-seq_data_analysis.R ├── TNK_cells_analysis.R ├── data_import_and_filter.R ├── endothelial_cells_analysis.R ├── fibroblast_cells_analysis.R ├── functions ├── cell_cluster_interaction.R ├── colors.R ├── myGSVA.R ├── my_spatial_analysis.R ├── mycellchat.R ├── myfeatureplot.R ├── myfindmarkers.R ├── mymodule_score.R ├── myrankNet.R ├── myspatial_featureplot.R ├── myviolin_sina.R ├── myvolcano.R ├── percent_plot.R ├── read_BDdata.R ├── run_pyscenic.sh ├── scrublet_del_doublet.py ├── spatial_findmarkers.R ├── stLearn_analysis.py └── stacked_violin_plot.R ├── myeloid_cells_analysis.R ├── nonimmune_cell_analysis.R ├── scRNA-seq_figures.R ├── source.R └── tumorcell_analysis.R /B_cells_analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jalon9358/LianLab_CRCLM/HEAD/B_cells_analysis.R -------------------------------------------------------------------------------- /README.md: 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