├── .gitignore ├── README.md ├── bin └── build-docs.sh ├── code ├── README.md ├── build.xml ├── ivy.xml ├── resources │ └── log4j.properties └── src │ └── java │ └── obo_tutorial │ ├── CommandLineInterface.java │ ├── Extractor.java │ ├── Merger.java │ ├── Modeller.java │ ├── TermMapper.java │ └── TripleConverter.java ├── docs ├── introduction.md ├── metadata.yaml ├── names.md ├── obo.md ├── ontology-development.md ├── processing-data.md └── using-and-reusing.md ├── examples ├── application.owl ├── data-after.csv ├── data-after.ttl ├── data-before.csv ├── data-raw.ttl ├── model.rq ├── obo-tutorial.owl ├── ontofox.owl ├── ontofox.txt ├── ontorat.owl ├── ontorat.txt ├── prefixes.ttl ├── qtt.txt ├── terms.csv ├── uberon-module.owl └── uberon-terms.txt └── images ├── bioportal.png ├── import.png ├── individuals.png ├── ontobee.png ├── ontomaton.png └── sparql.png /.gitignore: -------------------------------------------------------------------------------- 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