├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── ENMeval.Rproj ├── NAMESPACE ├── NEWS ├── R ├── ENMeval-package.R ├── ENMevaluate.R ├── ENMnulls.R ├── bvariegatus.R ├── classes.R ├── enm.bioclim.R ├── enm.maxent.jar.R ├── enm.maxnet.R ├── enmeval_results.R ├── partitions.R ├── plotting.R ├── rmaxnet_parse_lambdas.r ├── rmm.R ├── tune.enm.R ├── utilities.R └── zzz.R ├── README.md ├── _pkgdown.yml ├── data ├── bvariegatus.rda └── enmeval_results.rda ├── inst └── CITATION ├── man ├── ENMdetails.Rd ├── ENMeval-package.Rd ├── ENMevaluate.Rd ├── ENMevaluation.Rd ├── ENMevaluation_convert.Rd ├── ENMnull.Rd ├── ENMnulls.Rd ├── aic.maxent.Rd ├── buildRMM.Rd ├── bvariegatus.Rd ├── calc.10p.trainThresh.Rd ├── calc.niche.overlap.Rd ├── clamp.vars.Rd ├── corrected.var.Rd ├── emp.bg.Rd ├── emp.bg.grp.Rd ├── emp.occs.Rd ├── emp.occs.grp.Rd ├── enm.args.Rd ├── enm.bioclim.Rd ├── enm.errors.Rd ├── enm.fun.Rd ├── enm.maxent.jar.Rd ├── enm.maxnet.Rd ├── enm.msgs.Rd ├── enm.name.Rd ├── enm.ncoefs.Rd ├── enm.predict.Rd ├── enm.variable.importance.Rd ├── enmeval_results.Rd ├── eval.algorithm.Rd ├── eval.bg.Rd ├── eval.bg.grp.Rd ├── eval.clamp.directions.Rd ├── eval.doClamp.Rd ├── eval.models.Rd ├── eval.occs.Rd ├── eval.occs.grp.Rd ├── eval.occs.testing.Rd ├── eval.other.settings.Rd ├── eval.overlap.Rd ├── eval.partition.method.Rd ├── eval.partition.settings.Rd ├── eval.predictions.Rd ├── eval.results.Rd ├── eval.results.partitions.Rd ├── eval.rmm.Rd ├── eval.taxon.name.Rd ├── eval.tune.settings.Rd ├── eval.variable.importance.Rd ├── evalplot.envSim.hist.Rd ├── evalplot.envSim.map.Rd ├── evalplot.grps.Rd ├── evalplot.nulls.Rd ├── evalplot.stats.Rd ├── loadENMevaluation.Rd ├── lookup.enm.Rd ├── maxentJARversion.Rd ├── maxnet.predictRaster.Rd ├── null.algorithm.Rd ├── null.doClamp.Rd ├── null.emp.results.Rd ├── null.mod.settings.Rd ├── null.no.iter.Rd ├── null.other.settings.Rd ├── null.partition.method.Rd ├── null.partition.settings.Rd ├── null.results.Rd ├── null.results.partitions.Rd ├── parse_lambdas.Rd ├── partitions.Rd ├── plot.sim.dataPrep.Rd ├── saveENMevaluation.Rd └── tune.enm.Rd ├── tests ├── testthat.R └── testthat │ ├── data │ └── bvariegatus.rds │ ├── helper_funcs.R │ ├── test_bioclim.R │ ├── test_maxentJar.R │ └── test_maxnet.R └── vignettes ├── ENMeval-2.0-vignette.Rmd ├── bvariegatus.rds ├── e_mx_proc.rds └── mod_null.rds /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamiemkass/ENMeval/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: 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