├── .gitignore ├── CMakeLists.txt ├── LICENSE ├── README.md ├── chatgpt_baseline.py ├── data ├── banana ├── ecoli.fa ├── simpletest └── simpletest2 ├── include └── Suffix_Array.hpp ├── src ├── CMakeLists.txt ├── Suffix_Array.cpp └── main.cpp └── utils ├── gen_rand_seq.py └── test-correctness.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/.gitignore -------------------------------------------------------------------------------- /CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/CMakeLists.txt -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/README.md -------------------------------------------------------------------------------- /chatgpt_baseline.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/chatgpt_baseline.py -------------------------------------------------------------------------------- /data/banana: -------------------------------------------------------------------------------- 1 | banana 2 | -------------------------------------------------------------------------------- /data/ecoli.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/data/ecoli.fa -------------------------------------------------------------------------------- /data/simpletest: -------------------------------------------------------------------------------- 1 | ACTG 2 | -------------------------------------------------------------------------------- /data/simpletest2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/data/simpletest2 -------------------------------------------------------------------------------- /include/Suffix_Array.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/include/Suffix_Array.hpp -------------------------------------------------------------------------------- /src/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/src/CMakeLists.txt -------------------------------------------------------------------------------- /src/Suffix_Array.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/src/Suffix_Array.cpp -------------------------------------------------------------------------------- /src/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/src/main.cpp -------------------------------------------------------------------------------- /utils/gen_rand_seq.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/utils/gen_rand_seq.py -------------------------------------------------------------------------------- /utils/test-correctness.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jamshed/CaPS-SA/HEAD/utils/test-correctness.sh --------------------------------------------------------------------------------