├── .editorconfig
├── src
├── main
│ ├── resources
│ │ ├── org
│ │ │ └── hypernomicon
│ │ │ │ ├── resources
│ │ │ │ ├── empty.pdf
│ │ │ │ ├── blank_db.zip
│ │ │ │ ├── images
│ │ │ │ │ ├── book.png
│ │ │ │ │ ├── cut.png
│ │ │ │ │ ├── file.png
│ │ │ │ │ ├── json.png
│ │ │ │ │ ├── lock.png
│ │ │ │ │ ├── logo.ico
│ │ │ │ │ ├── plus.png
│ │ │ │ │ ├── star.png
│ │ │ │ │ ├── tag.png
│ │ │ │ │ ├── term.png
│ │ │ │ │ ├── arrow.png
│ │ │ │ │ ├── broom.png
│ │ │ │ │ ├── cancel.png
│ │ │ │ │ ├── chart.png
│ │ │ │ │ ├── debate.png
│ │ │ │ │ ├── drawer.png
│ │ │ │ │ ├── folder.png
│ │ │ │ │ ├── globe.png
│ │ │ │ │ ├── image.png
│ │ │ │ │ ├── minus.png
│ │ │ │ │ ├── nodes.png
│ │ │ │ │ ├── paper.png
│ │ │ │ │ ├── pencil.png
│ │ │ │ │ ├── people.png
│ │ │ │ │ ├── stance.png
│ │ │ │ │ ├── thesis.png
│ │ │ │ │ ├── argument.png
│ │ │ │ │ ├── arrow-090.png
│ │ │ │ │ ├── arrow-180.png
│ │ │ │ │ ├── arrow-270.png
│ │ │ │ │ ├── bookshelf.png
│ │ │ │ │ ├── chapter.png
│ │ │ │ │ ├── deletered.png
│ │ │ │ │ ├── details.png
│ │ │ │ │ ├── document.png
│ │ │ │ │ ├── download.png
│ │ │ │ │ ├── lock_open.png
│ │ │ │ │ ├── logobig.png
│ │ │ │ │ ├── magnifier.png
│ │ │ │ │ ├── page_copy.png
│ │ │ │ │ ├── paper-add.png
│ │ │ │ │ ├── position.png
│ │ │ │ │ ├── question.png
│ │ │ │ │ ├── recording.png
│ │ │ │ │ ├── refresh.png
│ │ │ │ │ ├── sort_19.png
│ │ │ │ │ ├── sort_az.png
│ │ │ │ │ ├── text-html.png
│ │ │ │ │ ├── treeview.png
│ │ │ │ │ ├── unknown.png
│ │ │ │ │ ├── view-form.png
│ │ │ │ │ ├── world_go.png
│ │ │ │ │ ├── edit-rename.png
│ │ │ │ │ ├── folder_add.png
│ │ │ │ │ ├── form-pencil.png
│ │ │ │ │ ├── gear-wrench.png
│ │ │ │ │ ├── glasses-db.png
│ │ │ │ │ ├── logo-16x16.png
│ │ │ │ │ ├── logo-32x32.png
│ │ │ │ │ ├── logo-48x48.png
│ │ │ │ │ ├── logo-64x64.png
│ │ │ │ │ ├── page_paste.png
│ │ │ │ │ ├── paper-minus.png
│ │ │ │ │ ├── picture_add.png
│ │ │ │ │ ├── rocket-fly.png
│ │ │ │ │ ├── sound_wave.png
│ │ │ │ │ ├── stance-for.png
│ │ │ │ │ ├── star-empty.png
│ │ │ │ │ ├── table-sheet.png
│ │ │ │ │ ├── triangle-up.png
│ │ │ │ │ ├── vise-drawer.png
│ │ │ │ │ ├── wand-magic.png
│ │ │ │ │ ├── world_link.png
│ │ │ │ │ ├── argument-for.png
│ │ │ │ │ ├── building-hedge.png
│ │ │ │ │ ├── calendar-month.png
│ │ │ │ │ ├── card-catalog.png
│ │ │ │ │ ├── control-stop.png
│ │ │ │ │ ├── document-code.png
│ │ │ │ │ ├── document-pdf.png
│ │ │ │ │ ├── document-tex.png
│ │ │ │ │ ├── document-text.png
│ │ │ │ │ ├── folder_closed.png
│ │ │ │ │ ├── logo-128x128.png
│ │ │ │ │ ├── logo-256x256.png
│ │ │ │ │ ├── pointer-rocket.png
│ │ │ │ │ ├── stance-against.png
│ │ │ │ │ ├── switch_window.png
│ │ │ │ │ ├── text-search2.png
│ │ │ │ │ ├── text_subscript.png
│ │ │ │ │ ├── treeview-small.png
│ │ │ │ │ ├── triangle-down.png
│ │ │ │ │ ├── view-document.png
│ │ │ │ │ ├── argument-against.png
│ │ │ │ │ ├── card-catalog_tr.png
│ │ │ │ │ ├── control-stop-180.png
│ │ │ │ │ ├── document_insert.png
│ │ │ │ │ ├── documents-stack.png
│ │ │ │ │ ├── edit_mathematics.png
│ │ │ │ │ ├── folders_explorer.png
│ │ │ │ │ ├── highlighter-left.png
│ │ │ │ │ ├── key-work-details.png
│ │ │ │ │ ├── keyword-link-add.png
│ │ │ │ │ ├── notebook-pencil.png
│ │ │ │ │ ├── pointer-preview.png
│ │ │ │ │ ├── text_superscript.png
│ │ │ │ │ ├── from_current_slide.png
│ │ │ │ │ ├── highlighter-right.png
│ │ │ │ │ ├── inbox-document-text.png
│ │ │ │ │ ├── information-italic.png
│ │ │ │ │ ├── magnifier_zoom_in.png
│ │ │ │ │ ├── magnifier_zoom_out.png
│ │ │ │ │ ├── page_white_vector.png
│ │ │ │ │ └── text_letter_omega.png
│ │ │ │ ├── pdfjs
│ │ │ │ │ └── web
│ │ │ │ │ │ ├── cmaps
│ │ │ │ │ │ ├── H.bcmap
│ │ │ │ │ │ ├── V.bcmap
│ │ │ │ │ │ ├── 78-H.bcmap
│ │ │ │ │ │ ├── 78-V.bcmap
│ │ │ │ │ │ ├── Add-H.bcmap
│ │ │ │ │ │ ├── Add-V.bcmap
│ │ │ │ │ │ ├── B5-H.bcmap
│ │ │ │ │ │ ├── B5-V.bcmap
│ │ │ │ │ │ ├── EUC-H.bcmap
│ │ │ │ │ │ ├── EUC-V.bcmap
│ │ │ │ │ │ ├── Ext-H.bcmap
│ │ │ │ │ │ ├── Ext-V.bcmap
│ │ │ │ │ │ ├── GB-H.bcmap
│ │ │ │ │ │ ├── GB-V.bcmap
│ │ │ │ │ │ ├── GBT-H.bcmap
│ │ │ │ │ │ ├── GBT-V.bcmap
│ │ │ │ │ │ ├── KSC-H.bcmap
│ │ │ │ │ │ ├── KSC-V.bcmap
│ │ │ │ │ │ ├── NWP-H.bcmap
│ │ │ │ │ │ ├── NWP-V.bcmap
│ │ │ │ │ │ ├── Roman.bcmap
│ │ │ │ │ │ ├── 78-EUC-H.bcmap
│ │ │ │ │ │ ├── 78-EUC-V.bcmap
│ │ │ │ │ │ ├── B5pc-H.bcmap
│ │ │ │ │ │ ├── B5pc-V.bcmap
│ │ │ │ │ │ ├── CNS1-H.bcmap
│ │ │ │ │ │ ├── CNS1-V.bcmap
│ │ │ │ │ │ ├── CNS2-H.bcmap
│ │ │ │ │ │ ├── CNS2-V.bcmap
│ │ │ │ │ │ ├── GB-EUC-H.bcmap
│ │ │ │ │ │ ├── GB-EUC-V.bcmap
│ │ │ │ │ │ ├── GBK2K-H.bcmap
│ │ │ │ │ │ ├── GBK2K-V.bcmap
│ │ │ │ │ │ ├── Hankaku.bcmap
│ │ │ │ │ │ ├── Hiragana.bcmap
│ │ │ │ │ │ ├── Katakana.bcmap
│ │ │ │ │ │ ├── RKSJ-H.bcmap
│ │ │ │ │ │ ├── RKSJ-V.bcmap
│ │ │ │ │ │ ├── 78-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 78-RKSJ-V.bcmap
│ │ │ │ │ │ ├── Add-RKSJ-H.bcmap
│ │ │ │ │ │ ├── Add-RKSJ-V.bcmap
│ │ │ │ │ │ ├── CNS-EUC-H.bcmap
│ │ │ │ │ │ ├── CNS-EUC-V.bcmap
│ │ │ │ │ │ ├── ETHK-B5-H.bcmap
│ │ │ │ │ │ ├── ETHK-B5-V.bcmap
│ │ │ │ │ │ ├── ETen-B5-H.bcmap
│ │ │ │ │ │ ├── ETen-B5-V.bcmap
│ │ │ │ │ │ ├── Ext-RKSJ-H.bcmap
│ │ │ │ │ │ ├── Ext-RKSJ-V.bcmap
│ │ │ │ │ │ ├── GBK-EUC-H.bcmap
│ │ │ │ │ │ ├── GBK-EUC-V.bcmap
│ │ │ │ │ │ ├── GBKp-EUC-H.bcmap
│ │ │ │ │ │ ├── GBKp-EUC-V.bcmap
│ │ │ │ │ │ ├── GBT-EUC-H.bcmap
│ │ │ │ │ │ ├── GBT-EUC-V.bcmap
│ │ │ │ │ │ ├── GBpc-EUC-H.bcmap
│ │ │ │ │ │ ├── GBpc-EUC-V.bcmap
│ │ │ │ │ │ ├── HKdla-B5-H.bcmap
│ │ │ │ │ │ ├── HKdla-B5-V.bcmap
│ │ │ │ │ │ ├── HKdlb-B5-H.bcmap
│ │ │ │ │ │ ├── HKdlb-B5-V.bcmap
│ │ │ │ │ │ ├── HKscs-B5-H.bcmap
│ │ │ │ │ │ ├── HKscs-B5-V.bcmap
│ │ │ │ │ │ ├── KSC-EUC-H.bcmap
│ │ │ │ │ │ ├── KSC-EUC-V.bcmap
│ │ │ │ │ │ ├── WP-Symbol.bcmap
│ │ │ │ │ │ ├── 78ms-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 78ms-RKSJ-V.bcmap
│ │ │ │ │ │ ├── 83pv-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 90ms-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 90ms-RKSJ-V.bcmap
│ │ │ │ │ │ ├── 90msp-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 90msp-RKSJ-V.bcmap
│ │ │ │ │ │ ├── 90pv-RKSJ-H.bcmap
│ │ │ │ │ │ ├── 90pv-RKSJ-V.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-0.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-1.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-2.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-3.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-4.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-5.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-6.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-0.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-1.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-2.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-3.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-4.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-5.bcmap
│ │ │ │ │ │ ├── ETenms-B5-H.bcmap
│ │ │ │ │ │ ├── ETenms-B5-V.bcmap
│ │ │ │ │ │ ├── GBTpc-EUC-H.bcmap
│ │ │ │ │ │ ├── GBTpc-EUC-V.bcmap
│ │ │ │ │ │ ├── HKgccs-B5-H.bcmap
│ │ │ │ │ │ ├── HKgccs-B5-V.bcmap
│ │ │ │ │ │ ├── HKm314-B5-H.bcmap
│ │ │ │ │ │ ├── HKm314-B5-V.bcmap
│ │ │ │ │ │ ├── HKm471-B5-H.bcmap
│ │ │ │ │ │ ├── HKm471-B5-V.bcmap
│ │ │ │ │ │ ├── KSC-Johab-H.bcmap
│ │ │ │ │ │ ├── KSC-Johab-V.bcmap
│ │ │ │ │ │ ├── KSCms-UHC-H.bcmap
│ │ │ │ │ │ ├── KSCms-UHC-V.bcmap
│ │ │ │ │ │ ├── KSCpc-EUC-H.bcmap
│ │ │ │ │ │ ├── KSCpc-EUC-V.bcmap
│ │ │ │ │ │ ├── UniCNS-UCS2-H.bcmap
│ │ │ │ │ │ ├── UniCNS-UCS2-V.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF8-H.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF8-V.bcmap
│ │ │ │ │ │ ├── UniGB-UCS2-H.bcmap
│ │ │ │ │ │ ├── UniGB-UCS2-V.bcmap
│ │ │ │ │ │ ├── UniGB-UTF16-H.bcmap
│ │ │ │ │ │ ├── UniGB-UTF16-V.bcmap
│ │ │ │ │ │ ├── UniGB-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniGB-UTF32-V.bcmap
│ │ │ │ │ │ ├── UniGB-UTF8-H.bcmap
│ │ │ │ │ │ ├── UniGB-UTF8-V.bcmap
│ │ │ │ │ │ ├── UniJIS-UCS2-H.bcmap
│ │ │ │ │ │ ├── UniJIS-UCS2-V.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF8-H.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF8-V.bcmap
│ │ │ │ │ │ ├── UniKS-UCS2-H.bcmap
│ │ │ │ │ │ ├── UniKS-UCS2-V.bcmap
│ │ │ │ │ │ ├── UniKS-UTF16-H.bcmap
│ │ │ │ │ │ ├── UniKS-UTF16-V.bcmap
│ │ │ │ │ │ ├── UniKS-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniKS-UTF32-V.bcmap
│ │ │ │ │ │ ├── UniKS-UTF8-H.bcmap
│ │ │ │ │ │ ├── UniKS-UTF8-V.bcmap
│ │ │ │ │ │ ├── Adobe-CNS1-UCS2.bcmap
│ │ │ │ │ │ ├── Adobe-GB1-UCS2.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-0.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-1.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-2.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-3.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-4.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-5.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-6.bcmap
│ │ │ │ │ │ ├── Adobe-Korea1-0.bcmap
│ │ │ │ │ │ ├── Adobe-Korea1-1.bcmap
│ │ │ │ │ │ ├── Adobe-Korea1-2.bcmap
│ │ │ │ │ │ ├── KSCms-UHC-HW-H.bcmap
│ │ │ │ │ │ ├── KSCms-UHC-HW-V.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF16-H.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF16-V.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniCNS-UTF32-V.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF16-H.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF16-V.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniJIS-UTF32-V.bcmap
│ │ │ │ │ │ ├── Adobe-Japan1-UCS2.bcmap
│ │ │ │ │ │ ├── Adobe-Korea1-UCS2.bcmap
│ │ │ │ │ │ ├── UniJIS-UCS2-HW-H.bcmap
│ │ │ │ │ │ ├── UniJIS-UCS2-HW-V.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF16-H.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF16-V.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF32-V.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF8-H.bcmap
│ │ │ │ │ │ ├── UniJIS2004-UTF8-V.bcmap
│ │ │ │ │ │ ├── UniJISPro-UCS2-V.bcmap
│ │ │ │ │ │ ├── UniJISPro-UTF8-V.bcmap
│ │ │ │ │ │ ├── UniJISPro-UCS2-HW-V.bcmap
│ │ │ │ │ │ ├── UniJISX0213-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniJISX0213-UTF32-V.bcmap
│ │ │ │ │ │ ├── UniJISX02132004-UTF32-H.bcmap
│ │ │ │ │ │ ├── UniJISX02132004-UTF32-V.bcmap
│ │ │ │ │ │ └── LICENSE
│ │ │ │ │ │ └── images
│ │ │ │ │ │ ├── grab.cur
│ │ │ │ │ │ ├── shadow.png
│ │ │ │ │ │ ├── grabbing.cur
│ │ │ │ │ │ ├── texture.png
│ │ │ │ │ │ ├── loading-icon.gif
│ │ │ │ │ │ ├── loading-small.png
│ │ │ │ │ │ ├── loading-small@2x.png
│ │ │ │ │ │ ├── findbarButton-next.png
│ │ │ │ │ │ ├── toolbarButton-print.png
│ │ │ │ │ │ ├── treeitem-collapsed.png
│ │ │ │ │ │ ├── treeitem-expanded.png
│ │ │ │ │ │ ├── findbarButton-next@2x.png
│ │ │ │ │ │ ├── toolbarButton-pageUp.png
│ │ │ │ │ │ ├── toolbarButton-search.png
│ │ │ │ │ │ ├── toolbarButton-zoomIn.png
│ │ │ │ │ │ ├── toolbarButton-zoomOut.png
│ │ │ │ │ │ ├── treeitem-collapsed@2x.png
│ │ │ │ │ │ ├── treeitem-expanded@2x.png
│ │ │ │ │ │ ├── findbarButton-next-rtl.png
│ │ │ │ │ │ ├── findbarButton-previous.png
│ │ │ │ │ │ ├── toolbarButton-bookmark.png
│ │ │ │ │ │ ├── toolbarButton-download.png
│ │ │ │ │ │ ├── toolbarButton-menuArrows.png
│ │ │ │ │ │ ├── toolbarButton-openFile.png
│ │ │ │ │ │ ├── toolbarButton-pageDown.png
│ │ │ │ │ │ ├── toolbarButton-pageUp-rtl.png
│ │ │ │ │ │ ├── toolbarButton-pageUp@2x.png
│ │ │ │ │ │ ├── toolbarButton-print@2x.png
│ │ │ │ │ │ ├── toolbarButton-search@2x.png
│ │ │ │ │ │ ├── toolbarButton-zoomIn@2x.png
│ │ │ │ │ │ ├── toolbarButton-zoomOut@2x.png
│ │ │ │ │ │ ├── treeitem-collapsed-rtl.png
│ │ │ │ │ │ ├── findbarButton-next-rtl@2x.png
│ │ │ │ │ │ ├── findbarButton-previous-rtl.png
│ │ │ │ │ │ ├── findbarButton-previous@2x.png
│ │ │ │ │ │ ├── toolbarButton-bookmark@2x.png
│ │ │ │ │ │ ├── toolbarButton-download@2x.png
│ │ │ │ │ │ ├── toolbarButton-openFile@2x.png
│ │ │ │ │ │ ├── toolbarButton-pageDown-rtl.png
│ │ │ │ │ │ ├── toolbarButton-pageDown@2x.png
│ │ │ │ │ │ ├── toolbarButton-viewOutline.png
│ │ │ │ │ │ ├── treeitem-collapsed-rtl@2x.png
│ │ │ │ │ │ ├── findbarButton-previous-rtl@2x.png
│ │ │ │ │ │ ├── toolbarButton-menuArrows@2x.png
│ │ │ │ │ │ ├── toolbarButton-pageDown-rtl@2x.png
│ │ │ │ │ │ ├── toolbarButton-pageUp-rtl@2x.png
│ │ │ │ │ │ ├── toolbarButton-sidebarToggle.png
│ │ │ │ │ │ ├── toolbarButton-viewAttachments.png
│ │ │ │ │ │ ├── toolbarButton-viewOutline-rtl.png
│ │ │ │ │ │ ├── toolbarButton-viewOutline@2x.png
│ │ │ │ │ │ ├── toolbarButton-viewThumbnail.png
│ │ │ │ │ │ ├── secondaryToolbarButton-handTool.png
│ │ │ │ │ │ ├── secondaryToolbarButton-lastPage.png
│ │ │ │ │ │ ├── secondaryToolbarButton-rotateCw.png
│ │ │ │ │ │ ├── toolbarButton-presentationMode.png
│ │ │ │ │ │ ├── toolbarButton-sidebarToggle-rtl.png
│ │ │ │ │ │ ├── toolbarButton-sidebarToggle@2x.png
│ │ │ │ │ │ ├── toolbarButton-viewThumbnail@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-firstPage.png
│ │ │ │ │ │ ├── secondaryToolbarButton-handTool@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-lastPage@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-rotateCcw.png
│ │ │ │ │ │ ├── secondaryToolbarButton-rotateCw@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-selectTool.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadEven.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadNone.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadOdd.png
│ │ │ │ │ │ ├── toolbarButton-presentationMode@2x.png
│ │ │ │ │ │ ├── toolbarButton-sidebarToggle-rtl@2x.png
│ │ │ │ │ │ ├── toolbarButton-viewAttachments@2x.png
│ │ │ │ │ │ ├── toolbarButton-viewOutline-rtl@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-firstPage@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-rotateCcw@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollWrapped.png
│ │ │ │ │ │ ├── secondaryToolbarButton-selectTool@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadEven@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadNone@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-spreadOdd@2x.png
│ │ │ │ │ │ ├── toolbarButton-secondaryToolbarToggle.png
│ │ │ │ │ │ ├── annotation-noicon.svg
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollHorizontal.png
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollVertical.png
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollWrapped@2x.png
│ │ │ │ │ │ ├── toolbarButton-secondaryToolbarToggle@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-documentProperties.png
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollVertical@2x.png
│ │ │ │ │ │ ├── toolbarButton-secondaryToolbarToggle-rtl.png
│ │ │ │ │ │ ├── secondaryToolbarButton-documentProperties@2x.png
│ │ │ │ │ │ ├── secondaryToolbarButton-scrollHorizontal@2x.png
│ │ │ │ │ │ ├── toolbarButton-secondaryToolbarToggle-rtl@2x.png
│ │ │ │ │ │ ├── annotation-insert.svg
│ │ │ │ │ │ ├── annotation-check.svg
│ │ │ │ │ │ ├── annotation-newparagraph.svg
│ │ │ │ │ │ ├── annotation-comment.svg
│ │ │ │ │ │ ├── annotation-paragraph.svg
│ │ │ │ │ │ ├── annotation-note.svg
│ │ │ │ │ │ ├── annotation-key.svg
│ │ │ │ │ │ └── annotation-help.svg
│ │ │ │ ├── css.css
│ │ │ │ ├── mainTextEdit.js
│ │ │ │ └── match-jump.js
│ │ │ │ ├── dialogs
│ │ │ │ ├── welcome.css
│ │ │ │ ├── about.css
│ │ │ │ ├── workMerge
│ │ │ │ │ ├── WorkTypeCtrl.fxml
│ │ │ │ │ ├── EntryTypeCtrl.fxml
│ │ │ │ │ ├── SingleLineCtrl.fxml
│ │ │ │ │ └── DateCtrl.fxml
│ │ │ │ ├── HelpDlg.fxml
│ │ │ │ └── VerdictDlg.fxml
│ │ │ │ ├── settings
│ │ │ │ ├── WorkSearchKeys.fxml
│ │ │ │ └── ExclWorkTypesDlg.fxml
│ │ │ │ └── tree
│ │ │ │ └── Tree.fxml
│ │ ├── META-INF
│ │ │ └── teamdev.licenses
│ │ └── simplelogger.properties
│ └── java
│ │ └── org
│ │ └── hypernomicon
│ │ ├── bib
│ │ ├── zotero
│ │ │ └── ZoteroEntity.java
│ │ ├── BibEntity.java
│ │ ├── mendeley
│ │ │ └── MendeleyEntity.java
│ │ ├── BibEntryRow.java
│ │ └── authors
│ │ │ └── WorkBibAuthors.java
│ │ ├── tree
│ │ ├── TreeCtrlr.java
│ │ └── AbstractTreeRow.java
│ │ ├── fileManager
│ │ ├── FolderHistoryItem.java
│ │ ├── EntityWithRow.java
│ │ └── AbstractEntityWithPath.java
│ │ ├── view
│ │ ├── tabs
│ │ │ └── ArgumentLowerPaneCtrlr.java
│ │ ├── controls
│ │ │ └── HiddenSidesPane.java
│ │ ├── wrappers
│ │ │ └── AbstractRow.java
│ │ └── tableCells
│ │ │ └── CursorAwareCell.java
│ │ ├── model
│ │ ├── DatasetAccessor.java
│ │ ├── records
│ │ │ ├── HDT_PersonGroup.java
│ │ │ ├── HDT_RecordWithPath.java
│ │ │ └── HDT_Subfield.java
│ │ ├── items
│ │ │ ├── HDI_Base.java
│ │ │ ├── NameItem.java
│ │ │ └── Ternary.java
│ │ └── HDX_BibDateElement.java
│ │ ├── query
│ │ ├── sources
│ │ │ ├── DatasetQuerySource.java
│ │ │ └── AllQuerySource.java
│ │ └── ui
│ │ │ └── ResultCellValue.java
│ │ └── Main.java
└── test
│ └── java
│ └── org
│ └── hypernomicon
│ └── MendeleyMetadataTest.java
├── .gitignore
└── versions-rules.xml
/.editorconfig:
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1 | root = true
2 |
3 | [*.{java,fxml,html,css}]
4 | indent_size = 2
5 | indent_style = space
6 | trim_trailing_whitespace = true
7 | charset = utf-8
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1 | .anchor-pane
2 | {
3 | -fx-background-color: #241f24;
4 | }
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7 | {
8 | -fx-alignment: center;
9 | }
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/src/main/resources/META-INF/teamdev.licenses:
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1 | Product: JxBrowser
2 | Version: 6.x
3 | Licensed to:
4 | License type: Development
5 | License info: Open Source Project
6 | Product binding: the specific project
7 | Product binding info: 6ts43l5etmnrh6uuswoj0e977iarals
8 | Expiration date: NEVER
9 | Support expiration date: NO SUPPORT
10 | Generation date: 15-05-2019
11 | Platforms: win32/x86;mac/x86;linux/x64;linux/x86;mac/x64;mac/ppc;win32/x64
12 | Company name: Hypernomicon
13 | SigB: kh6545118d35fck3f68hqc02bxo2z8k86xrkzme6lgmi7h49au7ky6dqss0ltlna6c333ch7eqc0jmrw
14 | SigA: zdvradqg4f5qxvk7ug0exg9eiwzbsjomx6ygfki0h79vc5i453suq6phlrhnq6g5vyb1kk1ttmxc9o8w
15 |
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/src/main/resources/org/hypernomicon/dialogs/about.css:
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1 | .anchor-pane
2 | {
3 | -fx-background-color: #241f24;
4 | }
5 |
6 | .text-area
7 | {
8 | -fx-background-color: transparent;
9 | -fx-text-fill: #906f6f;
10 | }
11 |
12 | .tab-pane .tab-header-area .tab-header-background
13 | {
14 | -fx-background-color: #584343;
15 | }
16 |
17 | .tab
18 | {
19 | -fx-background-color: #241f24;
20 | -fx-text-base-color: #906f6f;
21 | }
22 |
23 | .tab:selected
24 | {
25 | -fx-text-base-color: #b88d8d;
26 | -fx-font-weight: bold;
27 | }
28 |
29 | .label
30 | {
31 | -fx-text-fill: #906f6f;
32 | -fx-font-size: 13px;
33 | }
34 |
35 | .text-area .scroll-pane
36 | {
37 | -fx-background-color: transparent;
38 | }
39 |
40 | .text-area .scroll-pane .viewport
41 | {
42 | -fx-background-color: transparent;
43 | }
44 |
45 |
46 | .text-area .scroll-pane .content
47 | {
48 | -fx-background-color: transparent;
49 | }
50 |
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1 |
2 |
17 |
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/src/main/resources/org/hypernomicon/resources/css.css:
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1 | .tooltip
2 | {
3 | -fx-font-size: 14;
4 | -fx-show-duration: indefinite;
5 | -fx-wrap-text: true;
6 | -fx-max-width: 1600;
7 | -fx-font-weight: normal;
8 | }
9 |
10 | .tab-pane .tab
11 | {
12 | -fx-background-color: #e4e4e4;
13 | }
14 |
15 | #selectorTabPane .tab-header-area .tab-header-background
16 | {
17 | -fx-opacity: 0;
18 | }
19 |
20 | #selectorTabPane .tab
21 | {
22 | -fx-background-color: #e4e4e4;
23 | }
24 |
25 | .tab-pane .tab:selected
26 | {
27 | -fx-background-color: #ffffff;
28 | }
29 |
30 | #selectorTabPane .tab:selected
31 | {
32 | -fx-background-color: #9cd5e8;
33 | }
34 |
35 | .tab-pane:bottom > .tab-header-area
36 | {
37 | -fx-padding: 0 0 0 -0.083333em;
38 | }
39 |
40 | .tab-pane .tab-header-area .tab-header-background
41 | {
42 | -fx-background-color: #d4d4d4;
43 | }
44 |
45 | .wizard .tab-header-area
46 | {
47 | visibility: hidden;
48 | }
49 |
50 | .nonwizard .tab-header-area
51 | {
52 | visibility: visible;
53 | }
54 |
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/versions-rules.xml:
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1 |
2 |
3 |
4 |
5 | (?i).*Alpha(?:-?\d+)?
6 | (?i).*a(?:-?\d+)?
7 | (?i).*Beta(?:-?\d+)?
8 | (?i).*-B(?:-?\d+)?
9 | (?i).*RC(?:-?\d+)?
10 | (?i).*CR(?:-?\d+)?
11 | (?i).*M(?:-?\d+)?
12 | (?i).*-ea+.*?
13 |
14 |
15 |
16 |
17 |
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/src/main/resources/org/hypernomicon/resources/mainTextEdit.js:
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1 | /*
2 | * Copyright 2023-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | function insertHtmlAtCursor(html)
19 | {
20 | document.execCommand('insertHtml', false, html);
21 | }
22 |
23 | function getAnchorAtCursor()
24 | {
25 | var node = window.getSelection().anchorNode;
26 |
27 | while (node)
28 | {
29 | if (node.nodeName === 'A')
30 | {
31 | return node;
32 | }
33 |
34 | node = node.parentElement;
35 | }
36 |
37 | return node;
38 | }
39 |
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/src/main/java/org/hypernomicon/bib/zotero/ZoteroEntity.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.bib.zotero;
19 |
20 | import org.hypernomicon.bib.BibEntity;
21 |
22 | //---------------------------------------------------------------------------
23 |
24 | interface ZoteroEntity extends BibEntity
25 | {
26 |
27 | //---------------------------------------------------------------------------
28 | //---------------------------------------------------------------------------
29 |
30 | long getVersion();
31 |
32 | //---------------------------------------------------------------------------
33 | //---------------------------------------------------------------------------
34 |
35 | }
36 |
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/src/main/resources/org/hypernomicon/settings/WorkSearchKeys.fxml:
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1 |
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/src/main/java/org/hypernomicon/bib/BibEntity.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.bib;
19 |
20 | import org.hypernomicon.util.json.JsonArray;
21 | import org.hypernomicon.util.json.JsonObj;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | public interface BibEntity
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | boolean isSynced();
32 | void update(JsonObj jObj, boolean updatingExistingDataFromServer, boolean preMerge);
33 | String getKey();
34 | void saveToJsonArray(JsonArray jArr);
35 |
36 | //---------------------------------------------------------------------------
37 | //---------------------------------------------------------------------------
38 |
39 | }
40 |
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/src/main/java/org/hypernomicon/tree/TreeCtrlr.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.tree;
19 |
20 | import javafx.fxml.FXML;
21 | import javafx.scene.control.TreeTableColumn;
22 | import javafx.scene.control.TreeTableView;
23 |
24 | //---------------------------------------------------------------------------
25 |
26 | public class TreeCtrlr
27 | {
28 |
29 | //---------------------------------------------------------------------------
30 | //---------------------------------------------------------------------------
31 |
32 | @FXML TreeTableView ttv;
33 | @FXML TreeTableColumn tcName;
34 | @FXML TreeTableColumn tcLinked;
35 | @FXML TreeTableColumn tcDesc;
36 |
37 | //---------------------------------------------------------------------------
38 | //---------------------------------------------------------------------------
39 |
40 | }
41 |
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/src/main/java/org/hypernomicon/fileManager/FolderHistoryItem.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.fileManager;
19 |
20 | import org.hypernomicon.model.records.*;
21 | import org.hypernomicon.util.filePath.FilePath;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | record FolderHistoryItem(HDT_Folder folder, FilePath fileName, HDT_Record record)
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | FolderHistoryItem(FileRow folderRow, FileRow fileRow, HDT_Record record)
32 | {
33 | this(folderRow.getRecord(), fileRow == null ? null : fileRow.getFilePath().getNameOnly(), record);
34 | }
35 |
36 | //---------------------------------------------------------------------------
37 | //---------------------------------------------------------------------------
38 |
39 | }
40 |
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/src/main/java/org/hypernomicon/view/tabs/ArgumentLowerPaneCtrlr.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.view.tabs;
19 |
20 | import org.hypernomicon.view.wrappers.HyperTableRow;
21 |
22 | import javafx.fxml.FXML;
23 | import javafx.scene.control.*;
24 | import javafx.scene.layout.BorderPane;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | public class ArgumentLowerPaneCtrlr
29 | {
30 |
31 | //---------------------------------------------------------------------------
32 | //---------------------------------------------------------------------------
33 |
34 | @FXML BorderPane bpResponses;
35 | @FXML Tab tabWhereMade, tabResponses;
36 | @FXML TableView tvWhereMade, tvResponses;
37 | @FXML TabPane tabPane;
38 |
39 | //---------------------------------------------------------------------------
40 | //---------------------------------------------------------------------------
41 |
42 | }
43 |
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/src/main/java/org/hypernomicon/bib/mendeley/MendeleyEntity.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.bib.mendeley;
19 |
20 | import java.time.Instant;
21 |
22 | import org.hypernomicon.bib.BibEntity;
23 |
24 | //---------------------------------------------------------------------------
25 |
26 | interface MendeleyEntity extends BibEntity
27 | {
28 |
29 | //---------------------------------------------------------------------------
30 | //---------------------------------------------------------------------------
31 |
32 | /**
33 | * The instant that the Mendeley server says it was last modified
34 | * @return The instant that the Mendeley server says it was last modified
35 | */
36 | Instant lastModifiedOnServer();
37 |
38 | String Document_Last_Modified_JSON_Key = "last_modified",
39 | Folder_Last_Modified_JSON_Key = "modified";
40 |
41 | //---------------------------------------------------------------------------
42 | //---------------------------------------------------------------------------
43 |
44 | }
45 |
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/src/main/java/org/hypernomicon/model/DatasetAccessor.java:
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1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model;
19 |
20 | import java.util.*;
21 |
22 | import org.hypernomicon.model.records.HDT_Record;
23 |
24 | //---------------------------------------------------------------------------
25 |
26 | public interface DatasetAccessor extends Collection
27 | {
28 |
29 | //---------------------------------------------------------------------------
30 | //---------------------------------------------------------------------------
31 |
32 | String getKeyByID(int id);
33 | int getKeyNdxByID(int id);
34 | int getIDNdxByID(int id);
35 | int getRandomUsedID(Random random);
36 | HDT_DT getByID(int id);
37 | HDT_DT getByKeyNdx(int ndx);
38 | void setKey(int id, String newKey);
39 | Iterable keyIterable();
40 | Iterator keyIterator();
41 |
42 | //---------------------------------------------------------------------------
43 | //---------------------------------------------------------------------------
44 |
45 | }
46 |
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/src/main/resources/org/hypernomicon/settings/ExclWorkTypesDlg.fxml:
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/src/main/resources/simplelogger.properties:
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1 | # SLF4J's SimpleLogger configuration file
2 | # Simple implementation of Logger that sends all enabled log messages, for all defined loggers, to System.err.
3 |
4 | # Default logging detail level for all instances of SimpleLogger.
5 | # Must be one of ("trace", "debug", "info", "warn", or "error").
6 | # If not specified, defaults to "info".
7 | org.slf4j.simpleLogger.defaultLogLevel=error
8 |
9 | # Logging detail level for a SimpleLogger instance named "xxxxx".
10 | # Must be one of ("trace", "debug", "info", "warn", or "error").
11 | # If not specified, the default logging detail level is used.
12 | #org.slf4j.simpleLogger.log.xxxxx=
13 |
14 | # Set to true if you want the current date and time to be included in output messages.
15 | # Default is false, and will output the number of milliseconds elapsed since startup.
16 | #org.slf4j.simpleLogger.showDateTime=false
17 |
18 | # The date and time format to be used in the output messages.
19 | # The pattern describing the date and time format is the same that is used in java.text.SimpleDateFormat.
20 | # If the format is not specified or is invalid, the default format is used.
21 | # The default format is yyyy-MM-dd HH:mm:ss:SSS Z.
22 | #org.slf4j.simpleLogger.dateTimeFormat=yyyy-MM-dd HH:mm:ss:SSS Z
23 |
24 | # Set to true if you want to output the current thread name.
25 | # Defaults to true.
26 | #org.slf4j.simpleLogger.showThreadName=true
27 |
28 | # Set to true if you want the Logger instance name to be included in output messages.
29 | # Defaults to true.
30 | #org.slf4j.simpleLogger.showLogName=true
31 |
32 | # Set to true if you want the last component of the name to be included in output messages.
33 | # Defaults to false.
34 | #org.slf4j.simpleLogger.showShortLogName=false
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/view/controls/HiddenSidesPane.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.view.controls;
19 |
20 | import javafx.geometry.Side;
21 |
22 | //---------------------------------------------------------------------------
23 |
24 | /**
25 | * Custom version of the ControlsFX HiddenSidesPane class that exposes
26 | * the hide and show methods
27 | *
28 | * @author Jason Winning
29 | * @since 1.0
30 | */
31 | public class HiddenSidesPane extends org.controlsfx.control.HiddenSidesPane
32 | {
33 |
34 | //---------------------------------------------------------------------------
35 | //---------------------------------------------------------------------------
36 |
37 | public HiddenSidesPane() { setSkin(new HiddenSidesPaneSkin(this)); }
38 |
39 | @Override public void hide() { ((HiddenSidesPaneSkin) getSkin()).hide(); }
40 | public void show(Side side, boolean noInterrupt) { ((HiddenSidesPaneSkin) getSkin()).show(side, noInterrupt); }
41 |
42 | //---------------------------------------------------------------------------
43 | //---------------------------------------------------------------------------
44 |
45 | }
46 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/bib/BibEntryRow.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.bib;
19 |
20 | import org.hypernomicon.model.records.HDT_Work;
21 | import org.hypernomicon.view.wrappers.AbstractRow;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | public class BibEntryRow extends AbstractRow
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | private final BibEntry, ?> entry;
32 |
33 | public BibEntryRow(BibEntry, ?> entry) { this.entry = entry; }
34 | public BibEntry, ?> getEntry() { return entry; }
35 | public HDT_Work getWork() { return entry.getWork(); }
36 | public String getURLtoViewEntryInRefMgr() { return entry.getURLtoViewEntryInRefMgr(); }
37 |
38 | @SuppressWarnings("unchecked")
39 | @Override public HDT_T getRecord() { return (HDT_T) getWork(); }
40 |
41 | //---------------------------------------------------------------------------
42 | //---------------------------------------------------------------------------
43 |
44 | }
45 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/records/HDT_PersonGroup.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.records;
19 |
20 | import static org.hypernomicon.model.relations.RelationSet.RelationType.*;
21 |
22 | import java.util.List;
23 |
24 | import org.hypernomicon.model.DatasetAccessor;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | public class HDT_PersonGroup extends HDT_RecordBase
29 | {
30 |
31 | //---------------------------------------------------------------------------
32 | //---------------------------------------------------------------------------
33 |
34 | public final List parentGroups, subGroups;
35 |
36 | //---------------------------------------------------------------------------
37 |
38 | public HDT_PersonGroup(RecordState xmlState, DatasetAccessor dataset)
39 | {
40 | super(xmlState, dataset);
41 |
42 | parentGroups = getObjList(rtParentGroupOfGroup);
43 | subGroups = getSubjList(rtParentGroupOfGroup);
44 | }
45 |
46 | //---------------------------------------------------------------------------
47 | //---------------------------------------------------------------------------
48 |
49 | }
50 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/records/HDT_RecordWithPath.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.records;
19 |
20 | import static org.hypernomicon.util.Util.*;
21 |
22 | import org.hypernomicon.model.items.HyperPath;
23 | import org.hypernomicon.util.filePath.FilePath;
24 |
25 | //---------------------------------------------------------------------------
26 |
27 | public interface HDT_RecordWithPath extends HDT_Record
28 | {
29 |
30 | //---------------------------------------------------------------------------
31 | //---------------------------------------------------------------------------
32 |
33 | HyperPath getPath();
34 |
35 | //---------------------------------------------------------------------------
36 |
37 | default boolean pathNotEmpty() { return nullSwitch(getPath(), false, HyperPath::isNotEmpty); }
38 | default FilePath filePath() { return nullSwitch(getPath(), null , HyperPath::filePath); }
39 | default HDT_Folder parentFolder() { return nullSwitch(getPath(), null , HyperPath::parentFolder); }
40 |
41 | //---------------------------------------------------------------------------
42 | //---------------------------------------------------------------------------
43 |
44 | }
45 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/fileManager/EntityWithRow.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.fileManager;
19 |
20 | import org.hypernomicon.model.items.HyperPath;
21 | import org.hypernomicon.util.filePath.FilePath;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | public class EntityWithRow extends AbstractEntityWithPath
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | private final FileRow row;
32 |
33 | //---------------------------------------------------------------------------
34 |
35 | public EntityWithRow(FileRow row) { this.row = row; }
36 |
37 | //---------------------------------------------------------------------------
38 |
39 | @Override public FilePath getFilePath () { return row.getFilePath (); }
40 | @Override public HyperPath getHyperPath() { return row.getHyperPath(); }
41 | @Override public boolean isDirectory () { return row.isDirectory (); }
42 |
43 | //---------------------------------------------------------------------------
44 | //---------------------------------------------------------------------------
45 |
46 | }
47 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/query/sources/DatasetQuerySource.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.query.sources;
19 |
20 | import java.util.EnumSet;
21 |
22 | import org.hypernomicon.model.records.RecordType;
23 |
24 | //---------------------------------------------------------------------------
25 |
26 | public class DatasetQuerySource extends CombinedUnfilteredQuerySource
27 | {
28 |
29 | //---------------------------------------------------------------------------
30 | //---------------------------------------------------------------------------
31 |
32 | private final RecordType type;
33 |
34 | //---------------------------------------------------------------------------
35 |
36 | public DatasetQuerySource(RecordType type)
37 | {
38 | super(EnumSet.of(type));
39 | this.type = type;
40 | }
41 |
42 | //---------------------------------------------------------------------------
43 |
44 | @Override public RecordType recordType() { return type; }
45 | @Override public QuerySourceType sourceType() { return QuerySourceType.QST_recordsByType; }
46 |
47 | //---------------------------------------------------------------------------
48 | //---------------------------------------------------------------------------
49 |
50 | }
51 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/items/HDI_Base.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.items;
19 |
20 | import org.hypernomicon.model.HDI_Schema;
21 | import org.hypernomicon.model.HDI_Schema.HyperDataCategory;
22 | import org.hypernomicon.model.records.RecordType;
23 |
24 | //---------------------------------------------------------------------------
25 |
26 | public class HDI_Base
27 | {
28 |
29 | //---------------------------------------------------------------------------
30 | //---------------------------------------------------------------------------
31 |
32 | private final HDI_Schema schema;
33 |
34 | //---------------------------------------------------------------------------
35 |
36 | HDI_Base(HDI_Schema schema)
37 | {
38 | this.schema = schema;
39 | }
40 |
41 | //---------------------------------------------------------------------------
42 |
43 | public HyperDataCategory category() { return schema.category(); }
44 | public HDI_Schema getSchema() { return schema; }
45 |
46 | RecordType nestedTargetType() { return schema.nestedTargetType(); }
47 |
48 | //---------------------------------------------------------------------------
49 | //---------------------------------------------------------------------------
50 |
51 | }
52 |
--------------------------------------------------------------------------------
/src/main/resources/org/hypernomicon/dialogs/HelpDlg.fxml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
18 |
19 |
20 |
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/items/NameItem.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.items;
19 |
20 | import static org.hypernomicon.util.StringUtil.*;
21 |
22 | //---------------------------------------------------------------------------
23 |
24 | /**
25 | * All HDT_RecordBase objects hold a reference to an object of this kind.
26 | */
27 | public class NameItem
28 | {
29 |
30 | //---------------------------------------------------------------------------
31 | //---------------------------------------------------------------------------
32 |
33 | private String name = "", nameEngChar = "";
34 |
35 | //---------------------------------------------------------------------------
36 |
37 | public String get() { return name; }
38 | public String getEngChar() { return nameEngChar; }
39 |
40 | //---------------------------------------------------------------------------
41 | //---------------------------------------------------------------------------
42 |
43 | public void set(String newName)
44 | {
45 | name = safeStr(newName);
46 | nameEngChar = convertToEnglishChars(name.strip());
47 | }
48 |
49 | //---------------------------------------------------------------------------
50 | //---------------------------------------------------------------------------
51 |
52 | }
53 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/items/Ternary.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.items;
19 |
20 | //---------------------------------------------------------------------------
21 |
22 | public enum Ternary
23 | {
24 |
25 | //---------------------------------------------------------------------------
26 | //---------------------------------------------------------------------------
27 |
28 | Unset, False, True;
29 |
30 | //---------------------------------------------------------------------------
31 |
32 | public boolean isTrue () { return this == True ; }
33 | public boolean isFalse() { return this == False; }
34 | public boolean isUnset() { return this == Unset; }
35 |
36 | //---------------------------------------------------------------------------
37 |
38 | @Override public String toString() { return switch (this)
39 | {
40 | case False -> "False";
41 | case True -> "True";
42 | case Unset -> "Unset";
43 | };}
44 |
45 | //---------------------------------------------------------------------------
46 |
47 | public static boolean isNullOrUnset(Ternary val) { return (val == null) || (val == Unset); }
48 |
49 | //---------------------------------------------------------------------------
50 | //---------------------------------------------------------------------------
51 |
52 | }
53 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/bib/authors/WorkBibAuthors.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.bib.authors;
19 |
20 | import java.util.Iterator;
21 |
22 | import org.hypernomicon.model.authors.Author;
23 | import org.hypernomicon.model.authors.AuthorStandalone;
24 | import org.hypernomicon.model.records.HDT_Work;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | public class WorkBibAuthors extends BibAuthors
29 | {
30 |
31 | //---------------------------------------------------------------------------
32 | //---------------------------------------------------------------------------
33 |
34 | private final HDT_Work work;
35 |
36 | //---------------------------------------------------------------------------
37 |
38 | public WorkBibAuthors(HDT_Work work) { this.work = work; }
39 |
40 | //---------------------------------------------------------------------------
41 |
42 | @Override public Iterator iterator() { return work.getAuthors().stream().map(AuthorStandalone::new).map(a -> (Author)a).iterator(); }
43 | @Override public boolean isEmpty() { return work.getAuthors().isEmpty(); }
44 |
45 | //---------------------------------------------------------------------------
46 | //---------------------------------------------------------------------------
47 |
48 | }
49 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/records/HDT_Subfield.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model.records;
19 |
20 | import static org.hypernomicon.model.relations.RelationSet.RelationType.*;
21 |
22 | import java.util.List;
23 |
24 | import org.hypernomicon.model.DatasetAccessor;
25 | import org.hypernomicon.model.records.SimpleRecordTypes.HDT_Field;
26 | import org.hypernomicon.model.relations.HyperObjPointer;
27 |
28 | //---------------------------------------------------------------------------
29 |
30 | public class HDT_Subfield extends HDT_RecordBase
31 | {
32 |
33 | //---------------------------------------------------------------------------
34 | //---------------------------------------------------------------------------
35 |
36 | public final List persons;
37 |
38 | public final HyperObjPointer field;
39 |
40 | //---------------------------------------------------------------------------
41 |
42 | public HDT_Subfield(RecordState xmlState, DatasetAccessor dataset)
43 | {
44 | super(xmlState, dataset);
45 |
46 | persons = getSubjList(rtSubfieldOfPerson);
47 | field = getObjPointer(rtFieldOfSubfield);
48 | }
49 |
50 | //---------------------------------------------------------------------------
51 | //---------------------------------------------------------------------------
52 |
53 | }
54 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/model/HDX_BibDateElement.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.model;
19 |
20 | import static org.hypernomicon.model.Tag.*;
21 |
22 | import java.util.Iterator;
23 |
24 | import javax.xml.stream.events.Attribute;
25 |
26 | import org.hypernomicon.model.Exceptions.InvalidAttributeException;
27 | import org.hypernomicon.model.items.BibliographicDate;
28 | import org.hypernomicon.model.records.RecordState;
29 |
30 | //---------------------------------------------------------------------------
31 |
32 | public class HDX_BibDateElement extends HDX_Element
33 | {
34 |
35 | //---------------------------------------------------------------------------
36 | //---------------------------------------------------------------------------
37 |
38 | private final BibliographicDate bibDate;
39 |
40 | public BibliographicDate getBibDate() { return bibDate; }
41 |
42 | //---------------------------------------------------------------------------
43 |
44 | HDX_BibDateElement(Iterator attributesIt, RecordState xmlRecord) throws InvalidAttributeException
45 | {
46 | super(tagBibDate);
47 |
48 | bibDate = BibliographicDate.fromXmlAttribs(attributesIt, xmlRecord);
49 | }
50 |
51 | //---------------------------------------------------------------------------
52 | //---------------------------------------------------------------------------
53 |
54 | }
55 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/fileManager/AbstractEntityWithPath.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.fileManager;
19 |
20 | import org.hypernomicon.model.items.HyperPath;
21 | import org.hypernomicon.util.filePath.FilePath;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | abstract class AbstractEntityWithPath
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | private boolean related, relatedSet = false;
32 |
33 | //---------------------------------------------------------------------------
34 |
35 | public abstract FilePath getFilePath();
36 | public abstract boolean isDirectory();
37 | public abstract HyperPath getHyperPath();
38 |
39 | //---------------------------------------------------------------------------
40 | //---------------------------------------------------------------------------
41 |
42 | public boolean isRelated()
43 | {
44 | if (relatedSet == false)
45 | {
46 | related = HyperPath.isInUseByRecords(getHyperPath());
47 |
48 | relatedSet = true;
49 | }
50 |
51 | return related;
52 | }
53 |
54 | //---------------------------------------------------------------------------
55 | //---------------------------------------------------------------------------
56 |
57 | }
58 |
--------------------------------------------------------------------------------
/src/main/resources/org/hypernomicon/resources/match-jump.js:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2023-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | function jumpTo()
19 | {
20 | clearCurrent();
21 |
22 | if (results.length)
23 | {
24 | var current = results[currentNdx];
25 | if (typeof current === "undefined") return;
26 | current.classList.add("hypernomiconHiliteCurrent");
27 | current.scrollIntoView();
28 | lastNdx = currentNdx;
29 | }
30 | }
31 |
32 | function clearAll()
33 | {
34 | clearCurrent();
35 |
36 | Array.from(document.getElementsByClassName('hypernomiconHilite')).forEach(element =>
37 | {
38 | if (element.tagName === 'A')
39 | element.classList.remove("hypernomiconHilite");
40 | });
41 | }
42 |
43 | function clearCurrent()
44 | {
45 | if (lastNdx > -1)
46 | {
47 | var current = results[lastNdx];
48 | if (typeof current === "undefined") return;
49 | current.classList.remove("hypernomiconHiliteCurrent");
50 | lastNdx = 0;
51 | }
52 | }
53 |
54 | function nextResult()
55 | {
56 | if (results.length)
57 | {
58 | currentNdx = currentNdx + 1;
59 | if (currentNdx >= results.length)
60 | {
61 | currentNdx = 0;
62 | }
63 | jumpTo();
64 | }
65 | }
66 |
67 | function previousResult()
68 | {
69 | if (results.length)
70 | {
71 | currentNdx = currentNdx - 1;
72 | if (currentNdx < 0)
73 | {
74 | currentNdx = results.length - 1;
75 | }
76 | jumpTo();
77 | }
78 | }
79 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/query/sources/AllQuerySource.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.query.sources;
19 |
20 | import static org.hypernomicon.model.records.RecordType.*;
21 |
22 | import java.util.EnumSet;
23 |
24 | import org.hypernomicon.model.records.RecordType;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | public class AllQuerySource extends CombinedUnfilteredQuerySource
29 | {
30 |
31 | //---------------------------------------------------------------------------
32 | //---------------------------------------------------------------------------
33 |
34 | public AllQuerySource() { super(types()); }
35 |
36 | //---------------------------------------------------------------------------
37 |
38 | @Override public QuerySourceType sourceType() { return QuerySourceType.QST_allRecords; }
39 |
40 | //---------------------------------------------------------------------------
41 | //---------------------------------------------------------------------------
42 |
43 | private static EnumSet types()
44 | {
45 | EnumSet types = EnumSet.allOf(RecordType.class);
46 | types.removeAll(EnumSet.of(hdtNone, hdtAuxiliary, hdtHub));
47 | return types;
48 | }
49 |
50 | //---------------------------------------------------------------------------
51 | //---------------------------------------------------------------------------
52 |
53 | }
54 |
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/src/main/resources/org/hypernomicon/dialogs/workMerge/DateCtrl.fxml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
18 |
19 |
20 |
21 |
22 |
23 |
24 |
25 |
27 |
29 |
32 |
34 |
36 |
37 |
38 |
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/src/main/java/org/hypernomicon/view/wrappers/AbstractRow.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.view.wrappers;
19 |
20 | import org.hypernomicon.model.records.HDT_Record;
21 | import org.hypernomicon.model.records.RecordType;
22 |
23 | import javafx.scene.control.TreeItem;
24 |
25 | //---------------------------------------------------------------------------
26 |
27 | public abstract class AbstractRow>
28 | {
29 |
30 | //---------------------------------------------------------------------------
31 | //---------------------------------------------------------------------------
32 |
33 | public abstract HDT_T1 getRecord();
34 |
35 | public RecordType getRecordType () { return HDT_Record.getTypeSafe(getRecord()); }
36 | public int getRecordID () { return HDT_Record.getIDSafe (getRecord()); }
37 | protected TreeItem getTreeItem() { return null; }
38 |
39 | //---------------------------------------------------------------------------
40 | //---------------------------------------------------------------------------
41 |
42 | @SuppressWarnings("unchecked")
43 | HDT_T1 getRecordByType(RecordType recordType)
44 | {
45 | return getRecordType() == recordType ? (HDT_T1) getRecord() : null;
46 | }
47 |
48 | //---------------------------------------------------------------------------
49 | //---------------------------------------------------------------------------
50 |
51 | }
52 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/tree/AbstractTreeRow.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.tree;
19 |
20 | import org.hypernomicon.model.records.HDT_Record;
21 | import org.hypernomicon.view.wrappers.AbstractRow;
22 |
23 | import javafx.scene.control.TreeItem;
24 | import javafx.scene.image.ImageView;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | public abstract class AbstractTreeRow>
29 | extends AbstractRow
30 | implements Comparable
31 | {
32 |
33 | //---------------------------------------------------------------------------
34 | //---------------------------------------------------------------------------
35 |
36 | protected TreeItem treeItem = null;
37 | protected ImageView graphic = null;
38 | private final TreeModel treeModel;
39 |
40 | //---------------------------------------------------------------------------
41 |
42 | protected AbstractTreeRow(TreeModel treeModel) { this.treeModel = treeModel; }
43 |
44 | //---------------------------------------------------------------------------
45 |
46 | final AbstractTreeWrapper getTreeWrapper() { return treeModel.getTreeWrapper(); }
47 | @Override public final TreeItem getTreeItem() { return treeItem; }
48 |
49 | //---------------------------------------------------------------------------
50 | //---------------------------------------------------------------------------
51 |
52 | }
53 |
--------------------------------------------------------------------------------
/src/main/resources/org/hypernomicon/resources/pdfjs/web/cmaps/LICENSE:
--------------------------------------------------------------------------------
1 | %%Copyright: -----------------------------------------------------------
2 | %%Copyright: Copyright 1990-2009 Adobe Systems Incorporated.
3 | %%Copyright: All rights reserved.
4 | %%Copyright:
5 | %%Copyright: Redistribution and use in source and binary forms, with or
6 | %%Copyright: without modification, are permitted provided that the
7 | %%Copyright: following conditions are met:
8 | %%Copyright:
9 | %%Copyright: Redistributions of source code must retain the above
10 | %%Copyright: copyright notice, this list of conditions and the following
11 | %%Copyright: disclaimer.
12 | %%Copyright:
13 | %%Copyright: Redistributions in binary form must reproduce the above
14 | %%Copyright: copyright notice, this list of conditions and the following
15 | %%Copyright: disclaimer in the documentation and/or other materials
16 | %%Copyright: provided with the distribution.
17 | %%Copyright:
18 | %%Copyright: Neither the name of Adobe Systems Incorporated nor the names
19 | %%Copyright: of its contributors may be used to endorse or promote
20 | %%Copyright: products derived from this software without specific prior
21 | %%Copyright: written permission.
22 | %%Copyright:
23 | %%Copyright: THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
24 | %%Copyright: CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
25 | %%Copyright: INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
26 | %%Copyright: MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
27 | %%Copyright: DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
28 | %%Copyright: CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
29 | %%Copyright: SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
30 | %%Copyright: NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
31 | %%Copyright: LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
32 | %%Copyright: HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
33 | %%Copyright: CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
34 | %%Copyright: OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
35 | %%Copyright: SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
36 | %%Copyright: -----------------------------------------------------------
37 |
--------------------------------------------------------------------------------
/src/test/java/org/hypernomicon/MendeleyMetadataTest.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon;
19 |
20 | import static org.junit.jupiter.api.Assertions.*;
21 |
22 | import java.util.prefs.Preferences;
23 |
24 | import static org.hypernomicon.util.StringUtil.*;
25 |
26 | import org.hypernomicon.Const.PrefKey;
27 | import org.hypernomicon.bib.mendeley.MendeleyWrapper;
28 |
29 | import org.junit.jupiter.api.Assumptions;
30 | import org.junit.jupiter.api.Test;
31 |
32 | //---------------------------------------------------------------------------
33 |
34 | class MendeleyMetadataTest
35 | {
36 |
37 | //---------------------------------------------------------------------------
38 | //---------------------------------------------------------------------------
39 |
40 | @Test
41 | void documentTypesTest()
42 | {
43 | Preferences appPrefs = Preferences.userNodeForPackage(App.class);
44 |
45 | // userID is needed to load the AuthKeys from secure storage because
46 | // the Mendeley server call requires an access token
47 |
48 | String userID = appPrefs.get(PrefKey.BIB_UNIT_TEST_USER_ID, "");
49 |
50 | Assumptions.assumeTrue(strNotNullOrBlank(userID));
51 |
52 | MendeleyWrapper mendeleyWrapper = assertDoesNotThrow(() -> MendeleyWrapper.createForTesting(userID));
53 |
54 | String errorMsg = mendeleyWrapper.checkDocumentTypesFromServer();
55 |
56 | assertTrue(strNullOrBlank(errorMsg), errorMsg);
57 | }
58 |
59 | //---------------------------------------------------------------------------
60 | //---------------------------------------------------------------------------
61 |
62 | }
63 |
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/src/main/resources/org/hypernomicon/resources/pdfjs/web/images/annotation-help.svg:
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1 |
2 |
27 |
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/src/main/java/org/hypernomicon/query/ui/ResultCellValue.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.query.ui;
19 |
20 | import org.hypernomicon.model.records.HDT_Record;
21 |
22 | import javafx.beans.property.SimpleObjectProperty;
23 | import javafx.beans.value.ObservableValue;
24 | import javafx.scene.control.TableColumn.CellDataFeatures;
25 |
26 | //---------------------------------------------------------------------------
27 |
28 | final class ResultCellValue
29 | {
30 |
31 | //---------------------------------------------------------------------------
32 | //---------------------------------------------------------------------------
33 |
34 | final String text;
35 | final HDT_Record record;
36 |
37 | //---------------------------------------------------------------------------
38 |
39 | private ResultCellValue(String text, HDT_Record record)
40 | {
41 | this.text = text;
42 | this.record = record;
43 | }
44 |
45 | //---------------------------------------------------------------------------
46 |
47 | @Override public String toString() { return text; }
48 |
49 | //---------------------------------------------------------------------------
50 | //---------------------------------------------------------------------------
51 |
52 | static ObservableValue observableCellValue(CellDataFeatures cellData, String str)
53 | {
54 | return new SimpleObjectProperty<>(new ResultCellValue(str, cellData.getValue().getRecord()));
55 | }
56 |
57 | //---------------------------------------------------------------------------
58 | //---------------------------------------------------------------------------
59 |
60 | }
--------------------------------------------------------------------------------
/src/main/resources/org/hypernomicon/dialogs/VerdictDlg.fxml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
18 |
19 |
20 |
21 |
22 |
23 |
24 |
27 |
29 |
31 |
32 |
34 |
36 |
39 |
40 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/Main.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon;
19 |
20 | import java.io.PrintStream;
21 | import java.nio.charset.StandardCharsets;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | public final class Main
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | private Main() { throw new UnsupportedOperationException("Instantiation is not allowed."); }
32 |
33 | //---------------------------------------------------------------------------
34 |
35 | public static void main(String[] args)
36 | {
37 | System.setErr(new PrintStream(System.out)
38 | {
39 | @Override public void write(byte[] buf, int off, int len)
40 | {
41 | // This is a cleaner solution than an error-prone practice of always having to include JVM module-path arguments
42 | // pointing to exact file location of JavaFX modules, or simply setting the classpath as the module path (which
43 | // causes errors). As far as I can tell, no harm is actually done by loading the JavaFX classes from the classpath.
44 |
45 | if (! (new String(buf, StandardCharsets.UTF_8).contains("Unsupported JavaFX configuration: classes were loaded from 'unnamed module")))
46 | super.write(buf, off, len);
47 | }
48 | });
49 |
50 | javafx.application.Application.launch(App.class, args);
51 | }
52 |
53 | //---------------------------------------------------------------------------
54 | //---------------------------------------------------------------------------
55 |
56 | }
57 |
--------------------------------------------------------------------------------
/src/main/java/org/hypernomicon/view/tableCells/CursorAwareCell.java:
--------------------------------------------------------------------------------
1 | /*
2 | * Copyright 2015-2026 Jason Winning
3 | *
4 | * Licensed under the Apache License, Version 2.0 (the "License");
5 | * you may not use this file except in compliance with the License.
6 | * You may obtain a copy of the License at
7 | *
8 | * http://www.apache.org/licenses/LICENSE-2.0
9 | *
10 | * Unless required by applicable law or agreed to in writing, software
11 | * distributed under the License is distributed on an "AS IS" BASIS,
12 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 | * See the License for the specific language governing permissions and
14 | * limitations under the License.
15 | *
16 | */
17 |
18 | package org.hypernomicon.view.tableCells;
19 |
20 | import javafx.scene.Cursor;
21 | import javafx.scene.control.TableCell;
22 |
23 | //---------------------------------------------------------------------------
24 |
25 | public abstract class CursorAwareCell extends TableCell
26 | {
27 |
28 | //---------------------------------------------------------------------------
29 | //---------------------------------------------------------------------------
30 |
31 | public CursorAwareCell()
32 | {
33 | hoverProperty().addListener((obs, wasHover, isHover) ->
34 | {
35 | setCursor(isHover && (isEditing() == false) && (isEmpty() == false) && (getTableRow() != null) && (getTableRow().getItem() != null) ?
36 | getMouseCursor()
37 | :
38 | null); // Either not hovered, or currently editing: let default/editor cursor show
39 | });
40 |
41 | // Also listen for editing state changes, so cursor resets immediately
42 | editingProperty().addListener((obs, wasEditing, isEditing) ->
43 | {
44 | if (isEditing)
45 | setCursor(null); // hand control to the editor
46 | else if (isHover())
47 | setCursor(getMouseCursor());
48 | });
49 | }
50 |
51 | //---------------------------------------------------------------------------
52 | //---------------------------------------------------------------------------
53 |
54 | protected abstract Cursor getMouseCursor();
55 |
56 | //---------------------------------------------------------------------------
57 | //---------------------------------------------------------------------------
58 |
59 | }
60 |
--------------------------------------------------------------------------------