├── .dockerignore ├── .github └── workflows │ ├── gpu.yml │ ├── main.yml │ ├── pre-commit.yml │ └── release.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CODEOWNERS ├── MANIFEST.in ├── README.md ├── deepethogram ├── __init__.py ├── __main__.py ├── base.py ├── callbacks.py ├── conf │ ├── __init__.py │ ├── augs.yaml │ ├── config.yaml │ ├── debug.yaml │ ├── gui.yaml │ ├── inference.yaml │ ├── model │ │ ├── feature_extractor.yaml │ │ ├── flow_generator.yaml │ │ └── sequence.yaml │ ├── postprocessor.yaml │ ├── preset │ │ ├── deg_f.yaml │ │ ├── deg_m.yaml │ │ └── deg_s.yaml │ ├── project │ │ └── project_config_default.yaml │ ├── train.yaml │ ├── tune │ │ ├── feature_extractor.yaml │ │ ├── sequence.yaml │ │ └── tune.yaml │ └── zscore.yaml ├── configuration.py ├── data │ ├── __init__.py │ ├── augs.py │ ├── dali.py │ ├── dataloaders.py │ ├── datasets.py │ ├── keypoint_utils.py │ └── utils.py ├── debug.py ├── feature_extractor │ ├── __init__.py │ ├── __main__.py │ ├── inference.py │ ├── losses.py │ ├── models │ │ ├── CNN.py │ │ ├── __init__.py │ │ ├── classifiers │ │ │ ├── __init__.py │ │ │ ├── alexnet.py │ │ │ ├── densenet.py │ │ │ ├── inception.py │ │ │ ├── resnet.py │ │ │ ├── resnet3d.py │ │ │ ├── squeezenet.py │ │ │ └── vgg.py │ │ ├── hidden_two_stream.py │ │ └── utils.py │ └── train.py ├── file_io.py ├── flow_generator │ ├── __init__.py │ ├── __main__.py │ ├── inference.py │ ├── losses.py │ ├── models │ │ ├── FlowNetS.py │ │ ├── MotionNet.py │ │ ├── TinyMotionNet.py │ │ ├── TinyMotionNet3D.py │ │ ├── __init__.py │ │ └── components.py │ ├── train.py │ └── utils.py ├── gui │ ├── __init__.py │ ├── custom_widgets.py │ ├── icons │ │ ├── noun_Home_1158721.png │ │ ├── noun_Zoom In_744781.png │ │ ├── noun_pause_159135.png │ │ ├── noun_play_1713293.png │ │ └── noun_tap_145047.png │ ├── main.py │ ├── mainwindow.py │ ├── mainwindow.ui │ └── menus_and_popups.py ├── losses.py ├── metrics.py ├── postprocessing.py ├── projects.py ├── schedulers.py ├── sequence │ ├── __init__.py │ ├── __main__.py │ ├── inference.py │ ├── models │ │ ├── __init__.py │ │ ├── mlp.py │ │ ├── sequence.py │ │ └── tgm.py │ └── train.py ├── stoppers.py ├── tune │ ├── __init__.py │ ├── feature_extractor.py │ ├── sequence.py │ └── utils.py ├── utils.py ├── viz.py └── zscore.py ├── docker ├── Dockerfile-full ├── Dockerfile-gui └── Dockerfile-headless ├── docs ├── beta.md ├── code_examples.md ├── docker.md ├── file_structure.md ├── getting_started.md ├── images │ ├── deepethogram_schematic.png │ ├── ethogram_schematic.png │ ├── gui_annotated.png │ ├── label_format.png │ ├── project_config.png │ └── workflow.png ├── installation.md ├── model_performance.md ├── performance.md ├── testing.md ├── troubleshooting.md ├── using_CLI.md ├── using_code.md ├── using_config_files.md ├── using_gui.md └── using_tune.md ├── environment.yml ├── license.txt ├── pyproject.toml ├── pytest.ini ├── requirements.txt ├── reset_venv.sh ├── setup.py ├── setup_tests.py └── tests ├── setup_data.py ├── test_data.py 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