├── .gitignore ├── DEVELOPMENT.md ├── LICENSE-CODE.txt ├── LICENSE-TEXT.txt ├── MANIFEST.in ├── README.md ├── dist ├── CBE30338-0.0.2-py3-none-any.whl └── CBE30338-0.0.2.tar.gz ├── docs ├── 01.00-Getting-Started.html ├── 01.00-Getting-Started.ipynb ├── 01.01-Getting-Started-with-Python-and-Jupyter-Notebooks.html ├── 01.01-Getting-Started-with-Python-and-Jupyter-Notebooks.ipynb ├── 01.02-Python-Basics.html ├── 01.02-Python-Basics.ipynb ├── 01.03-Python-Conditionals-and-Libraries.html ├── 01.03-Python-Conditionals-and-Libraries.ipynb ├── 01.04-Python-Numeric-Integration-Revisited.html ├── 01.04-Python-Numeric-Integration-Revisited.ipynb ├── 02.00-Process-Modeling.html ├── 02.00-Process-Modeling.ipynb ├── 02.01-Process-Variables.html ├── 02.01-Process-Variables.ipynb ├── 02.02-Gravity-Drained-Tank.html ├── 02.02-Gravity-Drained-Tank.ipynb ├── 02.03-Blending-Tank-Simulation.html ├── 02.03-Blending-Tank-Simulation.ipynb ├── 02.04-Continuous-Product-Blending.html ├── 02.04-Continuous-Product-Blending.ipynb ├── 02.05-Hare-and-Lynx-Population-Dynamics.html ├── 02.05-Hare-and-Lynx-Population-Dynamics.ipynb ├── 02.06-Exothermic-CSTR.html ├── 02.06-Exothermic-CSTR.ipynb ├── 02.07-Fed-Batch-Bioreactor.html ├── 02.07-Fed-Batch-Bioreactor.ipynb ├── 02.08-Model-Library.html ├── 02.08-Model-Library.ipynb ├── 03.00-Linearization.html ├── 03.00-Linearization.ipynb ├── 03.01-Step-Response-of-a-Gravity-Drained-Tank.html ├── 03.01-Step-Response-of-a-Gravity-Drained-Tank.ipynb ├── 03.02-Linear-Approximation-of-a-Process-Model.html ├── 03.02-Linear-Approximation-of-a-Process-Model.ipynb ├── 03.03-Linear-Approximation-of-a-Multivariable-Model.html ├── 03.03-Linear-Approximation-of-a-Multivariable-Model.ipynb ├── 03.04-Fitting-First-Order-plus-Time-Delay-to-Step-Response.html ├── 03.04-Fitting-First-Order-plus-Time-Delay-to-Step-Response.ipynb ├── 03.05-One-Compartment-Pharmacokinetics.html ├── 03.05-One-Compartment-Pharmacokinetics.ipynb ├── 03.06-Second-Order-Models.html ├── 03.06-Second-Order-Models.ipynb ├── 03.07-Interacting-Tanks.html ├── 03.07-Interacting-Tanks.ipynb ├── 03.08-Manometer-Models-and-Dynamics.html ├── 03.08-Manometer-Models-and-Dynamics.ipynb ├── 03.09-COVID-19.html ├── 03.09-COVID-19.ipynb ├── 04.00-PID_Control.html ├── 04.00-PID_Control.ipynb ├── 04.01-Implementing_PID_Control_with_Python_Yield_Statement.html ├── 04.01-Implementing_PID_Control_with_Python_Yield_Statement.ipynb ├── 04.02-PID_Control_with_Setpoint_Weighting.html ├── 04.02-PID_Control_with_Setpoint_Weighting.ipynb ├── 04.03-PID_Control_with_Bumpless_Transfer.html ├── 04.03-PID_Control_with_Bumpless_Transfer.ipynb ├── 04.04-PID-Control-with-Anti--Reset--Windup.html ├── 04.04-PID-Control-with-Anti--Reset--Windup.ipynb ├── 04.05-Realizable-PID-Control.html ├── 04.05-Realizable-PID-Control.ipynb ├── 04.06-PID-Controller-Tuning.html ├── 04.06-PID-Controller-Tuning.ipynb ├── 04.10-PID-Control.html ├── 04.10-PID-Control.ipynb ├── 04.11-Implementing-PID-Control-in-Nonlinear-Simulations.html ├── 04.11-Implementing-PID-Control-in-Nonlinear-Simulations.ipynb ├── 04.12-Interactive-PID-Control-Tuning-with-Ziegler--Nichols.html ├── 04.12-Interactive-PID-Control-Tuning-with-Ziegler--Nichols.ipynb ├── 05.00-Frequency-Domain-Control-Design.html ├── 05.00-Frequency-Domain-Control-Design.ipynb ├── 05.01-Getting-Started-with-Transfer-Functions.html ├── 05.01-Getting-Started-with-Transfer-Functions.ipynb ├── 05.02-Closed--Loop-Transfer-Functions-for-Car-Cruise-Control.html ├── 05.02-Closed--Loop-Transfer-Functions-for-Car-Cruise-Control.ipynb ├── 05.03-Creating-Bode-Plots.html ├── 05.03-Creating-Bode-Plots.ipynb ├── 05.04-Controller-Tuning-Rules-in-Frequency-Domain.html ├── 05.04-Controller-Tuning-Rules-in-Frequency-Domain.ipynb ├── 05.05-Baroreflex-as-a-Linear-Control-System.html ├── 05.05-Baroreflex-as-a-Linear-Control-System.ipynb ├── 06.00-Optimization.html ├── 06.00-Optimization.ipynb ├── 06.01-Unconstrained-Scalar-Optimization.html ├── 06.01-Unconstrained-Scalar-Optimization.ipynb ├── 06.02-Linear-Production-Model.html ├── 06.02-Linear-Production-Model.ipynb ├── 06.03-Linear-Programming.html ├── 06.03-Linear-Programming.ipynb ├── 06.04-Linear-Production-Model-in-Pyomo.html ├── 06.04-Linear-Production-Model-in-Pyomo.ipynb ├── 06.05-Linear-Programming-in-Pyomo.html ├── 06.05-Linear-Programming-in-Pyomo.ipynb ├── 06.06-Linear-Blending-Problem.html ├── 06.06-Linear-Blending-Problem.ipynb ├── 06.07-Design-of-a-Cold-Weather-Fuel.html ├── 06.07-Design-of-a-Cold-Weather-Fuel.ipynb ├── 06.08-Gasoline-Blending.html ├── 06.08-Gasoline-Blending.ipynb ├── 06.99-Pyomo-Examples.html ├── 06.99-Pyomo-Examples.ipynb ├── 07.00-Simulation-and-Optimal-Control.html ├── 07.00-Simulation-and-Optimal-Control.ipynb ├── 07.01-Simulation-and-Optimal-Control-in-Pharmacokinetics.html ├── 07.01-Simulation-and-Optimal-Control-in-Pharmacokinetics.ipynb ├── 07.02-Soft-Landing-a-Rocket.html ├── 07.02-Soft-Landing-a-Rocket.ipynb ├── 07.03-Simulation-in-Pyomo.html ├── 07.03-Simulation-in-Pyomo.ipynb ├── 07.04-Simulation-of-an-Exothermic-CSTR.html ├── 07.04-Simulation-of-an-Exothermic-CSTR.ipynb ├── 07.05-First-Order-System-in-Pyomo.html ├── 07.05-First-Order-System-in-Pyomo.ipynb ├── 07.06-Path-Planning-for-a-Simple-Car.html ├── 07.06-Path-Planning-for-a-Simple-Car.ipynb ├── 07.07-Transient-Heat-Transfer-in-Various-Geometries.html ├── 07.07-Transient-Heat-Transfer-in-Various-Geometries.ipynb ├── 07.08-Path-Constraints.html ├── 07.08-Path-Constraints.ipynb ├── 08.00-Predictive-Control.html ├── 08.00-Predictive-Control.ipynb ├── 08.01-Zero-Order-Hold-and-Interpolation.html ├── 08.01-Zero-Order-Hold-and-Interpolation.ipynb ├── 09.00-Discrete-Events.html ├── 09.00-Discrete-Events.ipynb ├── 09.01-Scheduling-Multipurpose-Batch-Processes-using-State--Task-Networks.html ├── 09.01-Scheduling-Multipurpose-Batch-Processes-using-State--Task-Networks.ipynb ├── 09.02-State--Task-Networks.html ├── 09.02-State--Task-Networks.ipynb ├── 09.03-Machine-Bottleneck.html ├── 09.03-Machine-Bottleneck.ipynb ├── A.00-Additional-Python.html ├── A.00-Additional-Python.ipynb ├── A.01-Python-Library-for-CBE30338.html ├── A.01-Python-Library-for-CBE30338.ipynb ├── A.02-Modular-Approach-to-Simulation-using-Python-Generators.html ├── A.02-Modular-Approach-to-Simulation-using-Python-Generators.ipynb ├── A.03-Animation-in-Jupyter-Notebooks.html ├── A.03-Animation-in-Jupyter-Notebooks.ipynb ├── B.00-Student-Projects.html ├── B.00-Student-Projects.ipynb ├── B.01-Diabetes-Controlling-Blood-Glucose-Concentrations.html ├── B.01-Diabetes-Controlling-Blood-Glucose-Concentrations.ipynb ├── B.02-Visual-Tracking-of-an-Object-with-a-Drone.html ├── B.02-Visual-Tracking-of-an-Object-with-a-Drone.ipynb ├── FeedbackControlDiagram_small.png ├── _config.yml ├── data_index.html ├── data_index.ipynb ├── figure_index.html ├── figure_index.ipynb ├── figures │ ├── 408px-Agitated_vessel.png │ ├── Continuous-Mixed-Tank.png │ ├── CruiseControl.png │ ├── CruiseControl2.png │ ├── E11-10.png │ ├── GravityDrainedTanks.png │ ├── InteractingTanks.png │ ├── Internal_Model_Control.png │ ├── Kondili_1993.png │ ├── LP_ProductX.png │ ├── LP_ProductXY.png │ ├── LP_ProductY.png │ ├── LPprob01.png │ ├── Pharmaockinetics1.png │ ├── Pharmaockinetics2.png │ ├── Screen-Shot-Jupyter-Session.png │ ├── baroreflex.png │ ├── nihms-475924-f0001.jpg │ └── nrcardio.2015.96-f2.jpg ├── index.md ├── python_index.html ├── python_index.ipynb ├── tag_index.html ├── tag_index.ipynb ├── toc.html └── toc.ipynb ├── nbpages.cfg ├── notebooks ├── 01.00-Getting-Started.ipynb ├── 01.01-Getting-Started-with-Python-and-Jupyter-Notebooks.ipynb ├── 01.02-Python-Basics.ipynb ├── 01.03-Python-Conditionals-and-Libraries.ipynb ├── 01.04-Python-Numeric-Integration-Revisited.ipynb ├── 02.00-Process-Modeling.ipynb ├── 02.01-Process-Variables.ipynb ├── 02.02-Gravity-Drained-Tank.ipynb ├── 02.03-Blending-Tank-Simulation.ipynb ├── 02.04-Continuous-Product-Blending.ipynb ├── 02.05-Hare-and-Lynx-Population-Dynamics.ipynb ├── 02.06-Exothermic-CSTR.ipynb ├── 02.07-Fed-Batch-Bioreactor.ipynb ├── 02.08-Model-Library.ipynb ├── 03.00-Linearization.ipynb ├── 03.01-Step-Response-of-a-Gravity-Drained-Tank.ipynb ├── 03.02-Linear-Approximation-of-a-Process-Model.ipynb ├── 03.03-Linear-Approximation-of-a-Multivariable-Model.ipynb ├── 03.04-Fitting-First-Order-plus-Time-Delay-to-Step-Response.ipynb ├── 03.05-One-Compartment-Pharmacokinetics.ipynb ├── 03.06-Second-Order-Models.ipynb ├── 03.07-Interacting-Tanks.ipynb ├── 03.08-Manometer-Models-and-Dynamics.ipynb ├── 03.09-COVID-19.ipynb ├── 03_09_COVID_19.ipynb ├── 04.00-PID_Control.ipynb ├── 04.01-Implementing_PID_Control_with_Python_Yield_Statement.ipynb ├── 04.02-PID_Control_with_Setpoint_Weighting.ipynb ├── 04.03-PID_Control_with_Bumpless_Transfer.ipynb ├── 04.04-PID-Control-with-Anti--Reset--Windup.ipynb ├── 04.05-Realizable-PID-Control.ipynb ├── 04.06-PID-Controller-Tuning.ipynb ├── 04.10-PID-Control.ipynb ├── 04.11-Implementing-PID-Control-in-Nonlinear-Simulations.ipynb ├── 04.12-Interactive-PID-Control-Tuning-with-Ziegler--Nichols.ipynb ├── 05.00-Frequency-Domain-Control-Design.ipynb ├── 05.01-Getting-Started-with-Transfer-Functions.ipynb ├── 05.02-Closed--Loop-Transfer-Functions-for-Car-Cruise-Control.ipynb ├── 05.03-Creating-Bode-Plots.ipynb ├── 05.04-Controller-Tuning-Rules-in-Frequency-Domain.ipynb ├── 05.05-Baroreflex-as-a-Linear-Control-System.ipynb ├── 06.00-Optimization.ipynb ├── 06.01-Unconstrained-Scalar-Optimization.ipynb ├── 06.02-Linear-Production-Model.ipynb ├── 06.03-Linear-Programming.ipynb ├── 06.04-Linear-Production-Model-in-Pyomo.ipynb ├── 06.05-Linear-Programming-in-Pyomo.ipynb ├── 06.06-Linear-Blending-Problem.ipynb ├── 06.07-Design-of-a-Cold-Weather-Fuel.ipynb ├── 06.08-Gasoline-Blending.ipynb ├── 06.99-Pyomo-Examples.ipynb ├── 07.00-Simulation-and-Optimal-Control.ipynb ├── 07.01-Simulation-and-Optimal-Control-in-Pharmacokinetics.ipynb ├── 07.02-Soft-Landing-a-Rocket.ipynb ├── 07.03-Simulation-in-Pyomo.ipynb ├── 07.04-Simulation-of-an-Exothermic-CSTR.ipynb ├── 07.05-First-Order-System-in-Pyomo.ipynb ├── 07.06-Path-Planning-for-a-Simple-Car.ipynb ├── 07.07-Transient-Heat-Transfer-in-Various-Geometries.ipynb ├── 07.08-Path-Constraints.ipynb ├── 08.00-Predictive-Control.ipynb ├── 08.01-Zero-Order-Hold-and-Interpolation.ipynb ├── 09.00-Discrete-Events.ipynb ├── 09.01-Scheduling-Multipurpose-Batch-Processes-using-State--Task-Networks.ipynb ├── 09.02-State--Task-Networks.ipynb ├── 09.03-Machine-Bottleneck.ipynb ├── A.00-Additional-Python.ipynb ├── A.01-Python-Library-for-CBE30338.ipynb ├── A.02-Modular-Approach-to-Simulation-using-Python-Generators.ipynb ├── A.03-Animation-in-Jupyter-Notebooks.ipynb ├── B.00-Student-Projects.ipynb ├── B.01-Diabetes-Controlling-Blood-Glucose-Concentrations.ipynb ├── B.02-Visual-Tracking-of-an-Object-with-a-Drone.ipynb ├── code │ ├── 0B-99-pidgui.py │ ├── 0B.99-thermostat.data.py │ └── PIDsim.py ├── data │ ├── 0B.99-Step_Data.csv │ ├── 0B.99-Step_Test_Data.csv │ ├── 0B.99-Step_test.csv │ ├── 0B.99-data.csv │ ├── 0B.99-datafile.txt │ └── ThermocoupleData.csv ├── figures │ ├── 08.01-5-Figure1-1.png │ ├── 08.01-Chu_2013.pdf │ ├── 08.01-Chu_2013.png │ ├── 08.01-Chu_2013.tex │ ├── 08.01-Kondili_gantt.png │ ├── 08.01-MarveliasGrossman2003a.pdf │ ├── 08.01-MarveliasGrossman2003a.png │ ├── 08.01-MarveliasGrossman2003a.tex │ ├── 08.01-MarveliasGrossman2003b.pdf │ ├── 08.01-MarveliasGrossman2003b.tex │ ├── 08.01-Screen Shot 2017-09-19 at 8.15.10 AM.png │ ├── 08.01-Screen Shot 2018-04-17 at 4.15.33 PM.png │ ├── 08.01-State-task-network-representation-for-example-1.png │ ├── 08.01-State-task-network-representation-for-example2.png │ ├── 0B.99-515px-Honeywell_thermostat_open.jpg │ ├── 0B.99-Inkbird-16-Manual.png │ ├── 0B.99-Inkbird-16.png │ ├── 0B.99-TCLabOverview.pdf │ ├── 0B.99-TCLabOverview.tex │ ├── 0B.99-tclab_device.png │ ├── 408px-Agitated_vessel.png │ ├── B.00-TCLabOverview.png │ ├── B.01-FeedbackControlDiagram.png │ ├── Continuous-Mixed-Tank.png │ ├── ControlLoop.png │ ├── CruiseControl.png │ ├── CruiseControl2.png │ ├── E11-10.png │ ├── E11-14.png │ ├── FeedbackControlDiagram.pdf │ ├── FeedbackControlDiagram.png │ ├── FeedbackControlDiagram.tex │ ├── GravityDrainedTanks.png │ ├── InteractingTanks.png │ ├── Internal_Model_Control.png │ ├── Kondili_1993.pdf │ ├── Kondili_1993.png │ ├── Kondili_1993.tex │ ├── LP_ProductX.pdf │ ├── LP_ProductX.png │ ├── LP_ProductX.tex │ ├── LP_ProductXY.pdf │ ├── LP_ProductXY.png │ ├── LP_ProductXY.tex │ ├── LP_ProductY.pdf │ ├── LP_ProductY.png │ ├── LP_ProductY.tex │ ├── LPprob01.png │ ├── Pharmaockinetics1.png │ ├── Pharmaockinetics2.png │ ├── Screen-Shot-Jupyter-Session.png │ ├── ThermocoupleResponse.png │ ├── alcohol_stove.jpeg │ ├── baroreflex.png │ ├── nihms-475924-f0001.jpg │ 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