├── LICENSE ├── PART1 ├── 1.1_FILTERING_SNPs.R ├── 1.2_GENETIC_STRUCTURE.R ├── 1.3_GENETIC_DIVERSITY_DISTANCE_TAJIMAD.R ├── 1.4_POPULATION_GRAPHS.R ├── Extra_Test_MAPS.R ├── ReadMe.md └── functions_LanGen.R ├── ReadMe.md └── functions_LanGen.R /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/LICENSE -------------------------------------------------------------------------------- /PART1/1.1_FILTERING_SNPs.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/1.1_FILTERING_SNPs.R -------------------------------------------------------------------------------- /PART1/1.2_GENETIC_STRUCTURE.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/1.2_GENETIC_STRUCTURE.R -------------------------------------------------------------------------------- /PART1/1.3_GENETIC_DIVERSITY_DISTANCE_TAJIMAD.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/1.3_GENETIC_DIVERSITY_DISTANCE_TAJIMAD.R -------------------------------------------------------------------------------- /PART1/1.4_POPULATION_GRAPHS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/1.4_POPULATION_GRAPHS.R -------------------------------------------------------------------------------- /PART1/Extra_Test_MAPS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/Extra_Test_MAPS.R -------------------------------------------------------------------------------- /PART1/ReadMe.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/ReadMe.md -------------------------------------------------------------------------------- /PART1/functions_LanGen.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/PART1/functions_LanGen.R -------------------------------------------------------------------------------- /ReadMe.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/ReadMe.md -------------------------------------------------------------------------------- /functions_LanGen.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdalapicolla/LanGen_pipeline_version2/HEAD/functions_LanGen.R --------------------------------------------------------------------------------