├── LICENSE ├── README.md ├── data ├── eco_SEndseq │ └── eco_SEndseq.npy ├── eco_SMRTmeth │ ├── eco_m4c.csv │ └── eco_m4c.npy ├── eco_TIS │ └── eco_TIS.npy ├── eco_capseq │ └── eco_rm_capseq.npy ├── eco_custom │ └── eco_custom.npy ├── eco_regulon │ ├── eco_regulon_70.csv │ ├── eco_regulon_70.npy │ └── eco_regulon_strong.npy └── eco_smrtcapseq │ └── eco_smrt_capseq.npy ├── data_utils.py ├── environment.yml ├── eval.py ├── mem_transformer.py ├── run_TIS.sh ├── run_TSS.sh ├── run_cappable.sh ├── run_custom.sh ├── run_m4c.sh ├── run_regulon.sh ├── run_send.sh ├── run_smrtcappable.sh ├── train.py └── utils ├── adaptive_softmax.py ├── data_parallel.py ├── dna_functions.py ├── exp_utils.py ├── log_uniform_sampler.py ├── proj_adaptive_softmax.py └── vocabulary.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdcla/DNA-transformer/HEAD/LICENSE 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