├── .gitignore ├── LICENSE ├── documentation ├── .DS_Store ├── Figures │ ├── Figure_1.pdf │ ├── Figure_3.pdf │ ├── Figure_crossval.pdf │ ├── Figure_feature_corr.pdf │ └── Figure_modelbuilding.pdf ├── bblibrary.bib ├── makepdf.txt ├── neuroimage.csl ├── pcm_toolbox_manual.md ├── pcm_toolbox_manual.pdf └── readme.md ├── minimize.m ├── pcm_EM.m ├── pcm_EM_free.m ├── pcm_ML_constrained.m ├── pcm_ML_constrained_fast.c ├── pcm_ML_constrained_fast.m ├── pcm_ML_constrained_fast.mexmaci64 ├── pcm_ML_constrained_test.m ├── pcm_NR.m ├── pcm_NR_comp.m ├── pcm_NR_diag.m ├── pcm_NR_diagfree.m ├── pcm_addModelComp.m ├── pcm_blockdiag.m ├── pcm_bootstrapGroup.m ├── pcm_buildCorrModel.m ├── pcm_buildModelFromFeatures.m ├── pcm_calculateG.m ├── pcm_calculateGnonlinCorr.m ├── pcm_checkderiv.m ├── pcm_classicalMDS.m ├── pcm_componentPosterior.m ├── pcm_constructModelFamily.m ├── pcm_diagonalize.m ├── pcm_estGCrossval.m ├── pcm_estimateRegression.m ├── pcm_estimateU.m ├── pcm_estimateW.m ├── pcm_fitModelGroup.m ├── pcm_fitModelGroupCrossval.m ├── pcm_fitModelIndivid.m ├── pcm_fitModelIndividCrossval.m ├── pcm_fitModelRegression.m ├── pcm_free_startingval.m ├── pcm_generateData.m ├── pcm_getStartingval.m ├── pcm_getUserOptions.m ├── pcm_groupLikelihood.m ├── pcm_indicatorMatrix.m ├── pcm_knockModels.m ├── pcm_likelihood.m ├── pcm_likelihoodGroup.m ├── pcm_likelihoodIndivid.m ├── pcm_likelihoodRegression_YTY_ZTZ.m ├── pcm_likelihoodRegression_YYT_ZTZ.m ├── pcm_likelihoodRegression_YYT_ZZT.m ├── pcm_makeDataset.m ├── pcm_makeDesign.m ├── pcm_makePD.m ├── pcm_minimize.m ├── pcm_optimalAlgorithm.m ├── pcm_plotModelLikelihood.m ├── pcm_prepFreeModel.m ├── pcm_setUpFit.m ├── pcm_vararginoptions.m ├── readme.md ├── recipe_correlation ├── data_recipe_correlation.mat ├── pcm_recipe_correlation.m ├── pcm_recipe_correlation_MDS.m └── pcm_recipe_correlation_simulation.m ├── recipe_feature └── pcm_recipe_feature.m ├── recipe_finger ├── data_recipe_finger7T.mat ├── pcm_recipe_finger.m └── testing_script.m ├── recipe_nonlinear ├── data_recipe_nonlinear.mat ├── pcm_recipe_nonlinear.m ├── ra_modelpred_add.m ├── ra_modelpred_addsc.m └── ra_modelpred_scale.m ├── traceAB.c ├── traceAB.m ├── traceAB.mexa64 ├── traceAB.mexmaci64 ├── traceAB.mexw64 ├── traceABtrans.c ├── traceABtrans.m ├── traceABtrans.mexa64 ├── traceABtrans.mexmaci64 └── traceABtrans.mexw64 /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdiedrichsen/pcm_toolbox/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jdiedrichsen/pcm_toolbox/HEAD/LICENSE -------------------------------------------------------------------------------- /documentation/.DS_Store: -------------------------------------------------------------------------------- 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