├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── README.md ├── data ├── example_genes.json └── example_phenotypes.json ├── hpo_similarity ├── __init__.py ├── __main__.py ├── analyse_genes.py ├── check_proband_terms.py ├── data │ └── hp.obo ├── get_scores.py ├── load_files.py ├── obo.py ├── ontology.py ├── permute_probands.py ├── similarity.py └── test_similarity.py ├── scripts ├── prepare_ddd_files.py └── run_batch.py ├── setup.py └── tests ├── __init__.py ├── data └── obo.txt ├── test_check_proband_terms.py ├── test_hpo_similarity.py ├── test_ic_similarity.py ├── test_ontology.py └── test_similarity.py /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jeremymcrae/hpo_similarity/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.gitignore: 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