├── README.md ├── dvf.py ├── encode.py ├── licence.md ├── models ├── .DS_Store ├── model_siamese_varlen_0.15k_fl10_fn1000_dn1000_ep30_acc0.82.h5 ├── model_siamese_varlen_0.15k_fl10_fn1000_dn1000_ep30_acc0.82.h5_after2015.5_0.15k_Y_pred.txt ├── model_siamese_varlen_0.15k_fl10_fn1000_dn1000_ep30_acc0.82.h5_after2015.5_0.15k_Y_true.txt ├── model_siamese_varlen_0.3k_fl10_fn1000_dn1000_ep30_acc0.89.h5 ├── model_siamese_varlen_0.3k_fl10_fn1000_dn1000_ep30_acc0.89.h5_after2015.5_0.3k_Y_pred.txt ├── model_siamese_varlen_0.3k_fl10_fn1000_dn1000_ep30_acc0.89.h5_after2015.5_0.3k_Y_true.txt ├── model_siamese_varlen_0.5k_fl10_fn1000_dn1000_ep30_acc0.91.h5 ├── model_siamese_varlen_0.5k_fl10_fn1000_dn1000_ep30_acc0.91.h5_after2015.5_0.5k_Y_pred.txt ├── model_siamese_varlen_0.5k_fl10_fn1000_dn1000_ep30_acc0.91.h5_after2015.5_0.5k_Y_true.txt ├── model_siamese_varlen_1k_fl10_fn1000_dn1000_ep30_acc0.96.h5 ├── model_siamese_varlen_1k_fl10_fn1000_dn1000_ep30_acc0.96.h5_after2015.5_1k_Y_pred.txt └── model_siamese_varlen_1k_fl10_fn1000_dn1000_ep30_acc0.96.h5_after2015.5_1k_Y_true.txt ├── supplementary_tables ├── SupplementaryTable1_NCBI_accession.xlsx ├── SupplementaryTable2_simulation_abundance_profile.xlsx └── SupplementaryTable3_CRC_dataset.csv ├── test ├── .DS_Store ├── CRC_meta.fa ├── CRC_meta.fa_gt1000bp_dvfpred.txt ├── crAssphage.fa └── crAssphage.fa_gt0bp_dvfpred.txt ├── train_example ├── tr │ ├── host_tr.fa │ └── virus_tr.fa └── val │ ├── host_val.fa │ └── virus_val.fa └── training.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jessieren/DeepVirFinder/HEAD/README.md -------------------------------------------------------------------------------- /dvf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jessieren/DeepVirFinder/HEAD/dvf.py -------------------------------------------------------------------------------- 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