├── BRATS ├── README.md ├── compress_data.py ├── data │ ├── __init__.py │ ├── data_utils.py │ ├── datasets.py │ ├── dualpath.py │ ├── explore.py │ ├── parcellation.py │ ├── rand.py │ ├── sampler.py │ ├── singlepath.py │ ├── test_sampling.py │ ├── tf_utils.py │ └── transforms.py ├── ensemble_methods.py ├── experiments │ ├── kiunet.yaml │ ├── kiunet3d.yaml │ ├── kiunet3d_n4.yaml │ ├── kiunet3d_n8.yaml │ └── kiunet3d_wo_crop.yaml ├── models │ ├── __init__.py │ ├── criterions.py │ └── unet.py ├── predict_kiunet.py ├── prep.py └── train_kiunet.py ├── LICENSE ├── LiTS ├── DenseCRF │ ├── 2D-CRF.py │ └── 3D-CRF.py ├── README.md ├── data_analysis │ ├── get _threshold.py │ ├── get_spacing.py │ ├── liver_slice_percentage.py │ └── liver_voxel_percentage.py ├── data_prepare │ └── get_training_set.py ├── dataset │ └── dataset.py ├── loss │ ├── BCE.py │ ├── Dice.py │ ├── ELDice.py │ ├── Hybrid.py │ ├── Jaccard.py │ ├── SS.py │ ├── Tversky.py │ └── WBCE.py ├── net │ └── models.py ├── parameter.py ├── requirements.txt ├── train.py ├── utilities │ └── calculate_metrics.py └── val.py ├── README.md ├── arch └── ae.py ├── extractors.py ├── img └── arch.png ├── metrics.py ├── performancemetrics.m ├── test.py ├── train.py └── utils.py /BRATS/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jeya-maria-jose/KiU-Net-pytorch/HEAD/BRATS/README.md -------------------------------------------------------------------------------- /BRATS/compress_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jeya-maria-jose/KiU-Net-pytorch/HEAD/BRATS/compress_data.py -------------------------------------------------------------------------------- /BRATS/data/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /BRATS/data/data_utils.py: 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