├── .gitignore ├── README.md ├── R_pkg ├── DESCRIPTION ├── NAMESPACE ├── R │ ├── FDRreg.R │ ├── FDRregutils.R │ ├── FDRsmooth1D.R │ ├── PredictiveRecursion.R │ └── RcppExports.R ├── inst │ └── include │ │ ├── FDRreg.h │ │ └── FDRreg_RcppExports.h ├── man │ ├── BayesFDRreg.Rd │ ├── BenjaminiHochberg.Rd │ ├── FDRreg-package.Rd │ ├── FDRreg.Rd │ ├── GetErrorRates.Rd │ ├── plotFDR.Rd │ └── prfdr.Rd └── src │ ├── FDRreg.cpp │ ├── Makevars │ ├── Makevars.win │ ├── PolyaGamma.h │ ├── RNG.cpp │ ├── RNG.h │ ├── RRNG.cpp │ ├── RRNG.h │ ├── RcppExports.cpp │ ├── fl_dp.cpp │ ├── normix.cpp │ └── normix.h ├── data ├── 0.csv └── synchrony_smithkohn2008.csv └── examples ├── fdrs_example.R ├── simple_deconvolution.R ├── simstudy.R ├── synchrony_analyze.R └── wes_example.R /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/README.md -------------------------------------------------------------------------------- /R_pkg/DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/DESCRIPTION -------------------------------------------------------------------------------- /R_pkg/NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/NAMESPACE -------------------------------------------------------------------------------- /R_pkg/R/FDRreg.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/R/FDRreg.R -------------------------------------------------------------------------------- /R_pkg/R/FDRregutils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/R/FDRregutils.R -------------------------------------------------------------------------------- /R_pkg/R/FDRsmooth1D.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/R/FDRsmooth1D.R -------------------------------------------------------------------------------- /R_pkg/R/PredictiveRecursion.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/R/PredictiveRecursion.R -------------------------------------------------------------------------------- /R_pkg/R/RcppExports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/R/RcppExports.R -------------------------------------------------------------------------------- /R_pkg/inst/include/FDRreg.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/inst/include/FDRreg.h -------------------------------------------------------------------------------- /R_pkg/inst/include/FDRreg_RcppExports.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/inst/include/FDRreg_RcppExports.h -------------------------------------------------------------------------------- /R_pkg/man/BayesFDRreg.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/BayesFDRreg.Rd -------------------------------------------------------------------------------- /R_pkg/man/BenjaminiHochberg.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/BenjaminiHochberg.Rd -------------------------------------------------------------------------------- /R_pkg/man/FDRreg-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/FDRreg-package.Rd -------------------------------------------------------------------------------- /R_pkg/man/FDRreg.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/FDRreg.Rd -------------------------------------------------------------------------------- /R_pkg/man/GetErrorRates.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/GetErrorRates.Rd -------------------------------------------------------------------------------- /R_pkg/man/plotFDR.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/plotFDR.Rd -------------------------------------------------------------------------------- /R_pkg/man/prfdr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/man/prfdr.Rd -------------------------------------------------------------------------------- /R_pkg/src/FDRreg.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/FDRreg.cpp -------------------------------------------------------------------------------- /R_pkg/src/Makevars: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/Makevars -------------------------------------------------------------------------------- /R_pkg/src/Makevars.win: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/Makevars.win -------------------------------------------------------------------------------- /R_pkg/src/PolyaGamma.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/PolyaGamma.h -------------------------------------------------------------------------------- /R_pkg/src/RNG.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/RNG.cpp -------------------------------------------------------------------------------- /R_pkg/src/RNG.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/RNG.h -------------------------------------------------------------------------------- /R_pkg/src/RRNG.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/RRNG.cpp -------------------------------------------------------------------------------- /R_pkg/src/RRNG.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/RRNG.h -------------------------------------------------------------------------------- /R_pkg/src/RcppExports.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/RcppExports.cpp -------------------------------------------------------------------------------- /R_pkg/src/fl_dp.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/fl_dp.cpp -------------------------------------------------------------------------------- /R_pkg/src/normix.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/normix.cpp -------------------------------------------------------------------------------- /R_pkg/src/normix.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/R_pkg/src/normix.h -------------------------------------------------------------------------------- /data/0.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/data/0.csv -------------------------------------------------------------------------------- /data/synchrony_smithkohn2008.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/data/synchrony_smithkohn2008.csv -------------------------------------------------------------------------------- /examples/fdrs_example.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/examples/fdrs_example.R -------------------------------------------------------------------------------- /examples/simple_deconvolution.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/examples/simple_deconvolution.R -------------------------------------------------------------------------------- /examples/simstudy.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/examples/simstudy.R -------------------------------------------------------------------------------- /examples/synchrony_analyze.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/examples/synchrony_analyze.R -------------------------------------------------------------------------------- /examples/wes_example.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jgscott/FDRreg/HEAD/examples/wes_example.R --------------------------------------------------------------------------------