├── .gitignore ├── .idea ├── IS_mapper.iml ├── misc.xml ├── modules.xml ├── vcs.xml └── workspace.xml ├── CHANGES.txt ├── LICENSE.txt ├── MANIFIEST.in ├── README.md ├── scripts ├── __init__.py ├── __init__.pyc ├── compiled_table.py ├── create_output.py ├── ismap.py ├── ismap_v2_unittests.py ├── mapping_to_query.py ├── mapping_to_ref.py ├── read_grouping.py └── run_commands.py ├── setup.py └── test ├── example_results └── ERR225612__AM946016.1_table.txt └── inputs ├── ISSsu3.fasta └── S_suis_P17.gbk /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhawkey/IS_mapper/HEAD/.gitignore -------------------------------------------------------------------------------- /.idea/IS_mapper.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/jhawkey/IS_mapper/HEAD/.idea/IS_mapper.iml 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